Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq535 131 1e-25 seq1046 129 4e-25 seq1732 114 9e-21 >seq535 Length=1858795 Score = 131 bits (144), Expect = 1e-25 Identities = 171/230 (74%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || |||||||||||||| || || || |||||||| || || || ||| Sbjct 56746 CCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGGAA 56804 Query 15197 AGAATTCTCGCGTCTTCTAATTG-TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | ||| || ||| ||| | ||||| | ||||||||| ||| Sbjct 56805 AGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGTGG 56864 Query 15256 AATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||| |||||||| || ||||||| |||||| |||| ||||| || || | Sbjct 56865 AATTCCCTCTTTGTCTTGAATTTTTGCT-TTTACATTTTCGATGGTGTCTGATGGCTCAA 56923 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 56924 CTTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCATA 56972 Score = 131 bits (144), Expect = 1e-25 Identities = 171/230 (74%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || |||||||||||||| || || || |||||||| || || || ||| Sbjct 1714242 CCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGGAA 1714184 Query 15197 AGAATTCTCGCGTCTTCTAATTG-TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | ||| || ||| ||| | ||||| | ||||||||| ||| Sbjct 1714183 AGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGTGG 1714124 Query 15256 AATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||| |||||||| || ||||||| |||||| |||| ||||| || || | Sbjct 1714123 AATTCCCTCTTTGTCTTGAATTTTTGCT-TTTACATTTTCGATGGTGTCTGATGGCTCAA 1714065 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 1714064 CTTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCATA 1714016 >seq1046 Length=465179 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| || | || || || |||||||| || ||||| ||||||||||| Sbjct 190240 CCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAG 190181 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| || ||||| |||||| | || | |||||| ||||| ||| Sbjct 190180 AGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 190121 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| |||||||| || ||||| ||| ||| |||| ||||| || ||| || Sbjct 190120 ATTCCCTCTTTGTCCTGGATCTTTGC-CTTCACATTTTCGATGGTGTCTGAGGCTTCCAC 190062 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||||||||| || || |||||||| || || ||||| Sbjct 190061 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 190014 >seq1732 Length=1186882 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | || | ||| ||||| || ||||| || ||||| ||||| Sbjct 785462 CCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCTGAC 785403 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | ||||| |||||||||||||| | || | ||| || ||||| || Sbjct 785402 AAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGG 785343 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| ||||||| ||||||| |||| || || || | ||| || Sbjct 785342 ATACCCTCTTTGTCCTGAATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACC 785283 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| ||||| |||| |||||| ||||| || |||||| Sbjct 785282 TCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCATA 785235 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || | |||||||| || ||||| || ||||| ||||| Sbjct 785006 CCACCTCGGAGTCGCAATACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAG 784947 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || ||||||||||| |||||| | ||||| || || || || ||| Sbjct 784946 AGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGGGGA 784887 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| ||||| ||| ||| | || || || || | || || Sbjct 784886 ATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACT 784827 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| || ||||| || |||||||| || ||||| |||||| Sbjct 784826 TCAAGGGTAATCGTCTTACCAGTGAGAGTTTTCACGAAAATCTGCATA 784779 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | || | ||| || ||||| ||||| || |||||||| || Sbjct 785234 CCACCTCGCAGACGGAGCACAAGATGTAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAA 785175 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| || || |||||||| | || | ||| || ||||| ||| Sbjct 785174 AGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGA 785115 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || ||| ||||||| |||| || || || | ||| || Sbjct 785114 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACT 785055 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || |||||||| || || ||||| || ||||| || |||||| Sbjct 785054 TCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCATA 785007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362168623914636