Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1843 199 3e-46 seq713 98.7 8e-16 >seq1843 Length=1107702 Score = 199 bits (220), Expect = 3e-46 Identities = 639/982 (65%), Gaps = 17/982 (2%) Strand=Plus/Plus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 |||||| |||| | | || || || || || || | |||||| || | ||||| || Sbjct 491133 TTCGTTGGCAATCTCCCTGTAGTCCACCACACCATCCTGCCAAGTTCCTTTAACGGGACC 491192 Query 100369 GGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCG 100428 | ||| || ||||| ||| || | | || || || || ||||| || || Sbjct 491193 AGTCGCTACACCAGTGAACGGATTGCCATCTTTGTAACCGTTGACTCCAGTCCAGCCTCG 491252 Query 100429 GCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA 100488 || ||||| ||||| || || | ||| || ||| || || || | || || Sbjct 491253 TCCATACATAGCAACACCAACGACAATCTTCTTGGGGCTAACACCTTGAGCCAACAGGAA 491312 Query 100489 TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGT 100548 ||| || || || || |||| ||| || |||||||| || ||||| | | Sbjct 491313 TTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCATGCTGGGGCGTACAAACC 491372 Query 100549 GGTTTGGTAGCCCAAATCGGT-GTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAA 100607 | |||| ||| || | || ||| ||||| ||||| || || || || ||||| | | Sbjct 491373 TGCCTGGTGGCC-AAGTGTGTCGTTAGACCAAGCGCCCTTGAAGTCATAACTCATCAAGA 491431 Query 100608 ATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGC 100667 | || | ||| | || || || | | ||| | || || || ||||| | | Sbjct 491432 AGATGTGATCCATGTACTGCTGAGCTTCTTTGTAGTCCACAACCTGGATCTTGTCCCAAC 491491 Query 100668 CGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTT--GCAGTTGTAGCTGGTC 100725 |||| ||||| || ||||| |||||| | || || || | |||| |||| || Sbjct 491492 CGGAGCTGATAGCAGAAGTCAATTCGTACTTCTTACCAGTCTTGGCAGAA--AGCTCGTT 491549 Query 100726 CAGCATCGCGCGCAATTCCTTCAGTAAAATGTT-GTACGTGTCGGCGTCGCGCTCCCCGT 100784 || |||| | | |||||||| | | ||| ||| ||| |||| || | Sbjct 491550 CAACATCTGTCTGAGTTCCTTCA-TCAGCTGTACGTAGATGTGACCGTCT---TCAGGGG 491605 Query 100785 TGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGT 100844 || ||| |||||||| ||||| || || || || ||||| |||||||| || || | Sbjct 491606 CACCGAGATCAGGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACACCAT 491665 Query 100845 CAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTT 100904 | || |||||||| | | || |||||||| || | || || ||| || | | Sbjct 491666 CGAAGAACTTCCAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAA---GCGGTGTCTCT 491722 Query 100905 CCGCATCGTGCATGAAATAGAA---CGGGTCGGACAACGTCCAGCCGCCGATGGACGGCA 100961 | | |||| ||||| |||| |||||| | || ||||| || || | || |||| Sbjct 491723 TCACTTCGTCAGTGAAAAAGAAGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCA 491782 Query 100962 GAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGT 101021 || || |||| || | || | || | ||| | || ||||| || ||||||| Sbjct 491783 AGATCTTCAGGTCTGGTCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGT 491842 Query 101022 ACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGT 101081 | ||||||||||| | |||| ||||| || |||||||| | ||| ||||| ||||||| Sbjct 491843 AAGGCTCGTTCCAGGATGACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGT 491902 Query 101082 GAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGC 101141 | || | || ||||||||| | || |||| || | |||||| |||| ||||||| Sbjct 491903 GGATAGATACCTTGAAATCTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACTGC 491962 Query 101142 CGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGT 101201 | || || | |||||||| ||| || || || || || || ||||| || | Sbjct 491963 CTTCGATCTCCTTCAAACTGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCAT 492022 Query 101202 ACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACA 101261 ||| |||||| | |||||||| | ||||| ||| || || || || | ||| | Sbjct 492023 ACAGCAGATGAGTAAGATTGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTAGA 492082 Query 101262 CGCCCCACTCTACAAAATACGC 101283 | ||||| || ||||| || || Sbjct 492083 CACCCCATTCAACAAAGTAGGC 492104 >seq713 Length=456993 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| ||| ||||| || |||||||| ||||| || || ||||| |||||| || Sbjct 320781 CGCACAAATGGGCACTGTGGCGCCCAACGCTGATGGTCCTTCGCAGGGTCATCGCCCTCC 320840 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| | ||||||||||||||| || || ||||| || ||||| || || || || | | Sbjct 320841 ACCCACCTCATAATCTCCACTTTACAGAAAGCGCAACGGACTTCATCTCCACGGCCGAGG 320900 Query 25350 TAGTAGAACCCATT 25363 ||||| || ||||| Sbjct 320901 TAGTAAAATCCATT 320914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414560693956024