Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1732 107 1e-18 seq1046 89.7 3e-13 >seq1732 Length=1186882 Score = 107 bits (118), Expect = 1e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | ||| | ||| | ||| || ||||| || || ||||| ||||| Sbjct 785235 ACCACCTCGCAGACGGAGCACAAGATGTAGTGTGGATTCTTTCTGGATGTTGTAGTCAGA 785176 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || || || ||||| ||||| ||| ||| || | ||| |||||||| | || Sbjct 785175 AAGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG 785116 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | ||| ||||| ||| ||| ||||| |||| Sbjct 785115 AATGCCTTCTTTGTCTTGGATCTTGGCC---TTTACATTTTCAATTGTGTCAGAAGGTTC 785059 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || ||||| || |||||||| || || || || ||||| Sbjct 785058 AACTTCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCAT 785008 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | | |||| || | ||| | || || |||||||| || ||||| ||||| Sbjct 784779 ACCGCCACGGAGACGCAGAACAAGATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGA 784720 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | ||| ||||| |||||||| || || || |||||||| || | || Sbjct 784719 CAGTGTGCGGCCGTCTTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGG 784660 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || ||| ||| || ||| ||| |||||| || | || Sbjct 784659 AATGCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCGAC 784600 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || ||||| ||||| | |||||||||||||| |||||| Sbjct 784599 TTCAAGCGTAATAGTTTTACCCGTCAAGGTTTTTACGAAAATCTGCATG 784551 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | ||| | ||| | || |||||||| || || ||||| || || Sbjct 786144 ACCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGA 786085 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || || ||| |||| |||||| ||| || |||| ||| |||||||| | ||| Sbjct 786084 AAGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGGGG 786025 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 |||||||| || || ||| ||| || | | ||| || || || | ||| Sbjct 786024 -ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAAC 785966 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || || || || | || ||||||||||| ||||| Sbjct 785965 CTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785918 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | ||| | ||| | ||| || ||||| || || ||||| ||||| Sbjct 786824 ACCTCCTCGCAGACGGAGCACAAGATGAAGTGTGGATTCTTTCTGGATGTTGTAGTCAGA 786765 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || || ||| ||||| || ||||| ||| || | ||| |||||||| | ||| Sbjct 786764 AAGAGTGCGTCCGTCTTCCAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGGGG 786705 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 |||||||| || || ||| ||| || | | ||| || || |||| ||| Sbjct 786704 -ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGTTCAAC 786646 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || || || || | || ||||||||||| ||||| Sbjct 786645 CTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 786598 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | ||| | ||| | || || |||||||| |||||||| ||||| Sbjct 785690 ACCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGA 785631 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || || ||| || || || ||||| ||| || | ||| |||||||| | ||| Sbjct 785630 AAGAGTGCGTCCGTCTTCTAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGGGG 785571 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 |||||||| || || ||| ||| || | | ||| || || || | ||| Sbjct 785570 -ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAAC 785512 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || || || || | || ||||||||||| ||||| Sbjct 785511 CTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785464 >seq1046 Length=465179 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 33137 TCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAA 33196 |||| ||| ||||| |||| | |||||| || | || || || ||||| || |||||| Sbjct 190245 TCTT-ACCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAA 190187 Query 33197 TCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 ||||| | | | | || ||||| || || ||| || || | |||||||||||| Sbjct 190186 TCAGAGAGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCT 190127 Query 33257 GTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || || || ||||| || | | | ||| || || ||| || ||||| | Sbjct 190126 GGTGGGATTCCCTCTTTGTCCTGGATCTTTGCC---TTCACATTTTCGATGGTGTCTGAG 190070 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || || ||||| ||||| || ||||||||||| || ||||| Sbjct 190069 GCTTCCACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 190014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318768291295608