Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1732 102 6e-17 seq535 98.7 7e-16 >seq1732 Length=1186882 Score = 102 bits (112), Expect = 6e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||||||||||| || || || | | || | || ||||| || Sbjct 784755 ATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAGTGTGCGGCCGTCTTCCAACTG 784696 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 |||||||| || ||||| |||||||| || |||| | |||||||||||| |||||| Sbjct 784695 CTTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTGAATTTT 784636 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||| || | ||| || || | ||||| || || | |||||| |||||||| || Sbjct 784635 AGCTTTAACATTTTCAATGGTGTCGGATGGCTCGACTTCAAGCGTAATAGTTTTACCCGT 784576 Query 44098 TAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTGTAACA 44138 || || || || || || |||||| || | | ||||||| Sbjct 784575 CAAGGTTTTTACGAAAATCTGCATGGTGA-TATCTGTAACA 784536 >seq535 Length=1858795 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || ||||| || ||||| || || ||||||||||||||||| ||| Sbjct 56746 CCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGGAA 56804 Query 43955 AATTGACGCTCATCGTCCAATTG-TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| |||| ||| || ||||| || ||||| | ||| ||||| | || Sbjct 56805 AGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGTGG 56864 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| ||||||| ||| || | | | || |||| ||||| || Sbjct 56865 AATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTCAAC 56924 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| || || || || || ||||| |||||||| Sbjct 56925 TTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCAT 56971 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || ||||| || ||||| || || ||||||||||||||||| ||| Sbjct 1714242 CCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGGAA 1714184 Query 43955 AATTGACGCTCATCGTCCAATTG-TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| |||| ||| || ||||| || ||||| | ||| ||||| | || Sbjct 1714183 AGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGTGG 1714124 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| ||||||| ||| || | | | || |||| ||||| || Sbjct 1714123 AATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTCAAC 1714064 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| || || || || || ||||| |||||||| Sbjct 1714063 TTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCAT 1714017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354767240050608