Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1843 197 1e-45 seq713 98.7 8e-16 seq1732 91.5 1e-13 >seq1843 Length=1107702 Score = 197 bits (218), Expect = 1e-45 Identities = 763/1185 (64%), Gaps = 23/1185 (2%) Strand=Plus/Plus Query 100802 TTCATAACATTTAACAAGTCGCCGTTGTCGGCGTCGATCTCCCAAGCAAATAACCCACCC 100861 ||||| ||||||| | ||| || ||||| || || | |||||||||||| | |||||| Sbjct 490930 TTCATGGCATTTAATATGTCACCATTGTCCGCATCCACCTCCCAAGCAAACAGCCCACCT 490989 Query 100862 AAGCCATTTTGATCCACGTA-ACTAGTTTTTGCCAATACAGAATCAACACT-ATCAAACG 100919 || | | ||| ||| | | | | | || |||| ||| | |||| ||| Sbjct 490990 AA--CTTATTGTTCCTCACATATTTGGCCTTCTCAATGGTCGATCTCGCGTCATCATACG 491047 Query 100920 ATATCAAGTCGCCATTGTCTTTGTTAAAAACGTAAGATGCTTTAGCGGCCGTGTCAAATT 100979 || | ||| ||| | || || | || ||||| | ||| | ||| || ||||| | | Sbjct 491048 TAATAAGGTCCCCAGTCTCCTTCCTGAACACGTATGGTGCCTGAGCCACCTTGTCATAGT 491107 Query 100980 TGTA------TTTGTACTTGTTTAATTCGTTTTTAATTTGGCGATAATCGACAACGCCGT 101033 ||| |||| || | |||||| ||| | | || || || || || | Sbjct 491108 GGTACTCCCATTTGCCCTGAGCAATTTCGTTGGCAATCTCCCTGTAGTCCACCACACCAT 491167 Query 101034 CTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCAT 101093 | | |||||| || | ||||| || | ||| || ||||| ||| || | | | Sbjct 491168 CCTGCCAAGTTCCTTTAACGGGACCAGTCGCTACACCAGTGAACGGATTGCCATCTTTGT 491227 Query 101094 AGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCG 101153 | || || || ||||| || || || ||||| ||||| || || | ||| || | | Sbjct 491228 AACCGTTGACTCCAGTCCAGCCTCGTCCATACATAGCAACACCAACGACAATCTT-CTTG 491286 Query 101154 GGTCTA-CGCCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTT 101212 || ||| | || || | || |||| ||| || | || || |||| ||| || Sbjct 491287 GGGCTAACACCTTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTG 491346 Query 101213 GGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCG 101272 |||||||| || ||||| | | || | ||| || | ||| ||||| ||| Sbjct 491347 GGGTTCCATGCTGGGGCGTACAAACCTGCCTGGTGGCCAAGTGTGTCGTTAGACCAAGCG 491406 Query 101273 CCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTAT 101332 || ||||| || || ||||| | || || | ||| | | ||| || || | ||| Sbjct 491407 CCCTTGAAGTCATAACTCATCAAGAAGATGTGATCCATGTACTGCTGAGCTTCTTTGTAG 491466 Query 101333 TTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTG 101392 | || || || ||||| ||| || || || ||| || |||||||| | || Sbjct 491467 TCCACAACCTGGATCTTGTCCCAACCGGAGCTGATAGCAGAAGTCAATTCGTACTTCTTA 491526 Query 101393 CCCGTTT--GCAGTTGCAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTT-G 101449 || || | |||| | ||||| || ||| | | ||| |||| | | ||| | Sbjct 491527 CCAGTCTTGGCAGAA--AGCTCGTTCAACATCTGTCTGAGTTCCTTCA-TCAGCTGTACG 491583 Query 101450 TACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGA 101509 || ||| | |||| ||| | ||||| |||||||| ||||||||||| || Sbjct 491584 TAGATGTGACCGTC---TTCAGGGGCACCGAGATCAGGGTTGGCTCCTTTACCACCAGGG 491640 Query 101510 AACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACA 101569 || |||||||| ||||| || || || || || ||||| | | || || ||||| Sbjct 491641 AATTCCCAATCAATGTCAACACCATCGAAGAACTTCCAGGTTTCGAGGAAGTCCTTGACT 491700 Query 101570 GAATCCACAAACACACGCCGTTTTATCGCGTC-GTGCATATAATAGAACGGGTCGGACAA 101628 ||| | || || | | || | |||| ||| | | | |||||||||| | || Sbjct 491701 GAAGCAACGAAGCGGTGTCTCTTCACTTCGTCAGTG-AAAAAGAAGAACGGGTCAGCCAG 491759 Query 101629 TGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCAT 101688 ||||| || || | || ||||| || || |||| ||| | || ||| | ||| Sbjct 491760 GGTCCATCCACCAACAGAAGGCAAGATCTTCAGGTCTGGTCTCGCTTGTTTCAACATCAT 491819 Query 101689 TAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTT 101748 | || || ||||| || ||||| ||||||||||| | || | ||| ||||| ||||| Sbjct 491820 CAATTGGCCGAAGTTACCCTTGTAAGGCTCGTTCCAGGATGACAAACCCTTCTGTGGTTT 491879 Query 101749 TTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGA 101808 ||| | ||| ||||||||||||||||||| || || |||||| | ||| ||| || Sbjct 491880 TTGGAGTGCAGCCCAAGGATCGTGGATAGATACCTTGAAATCTTCCCTGCCGCTGCATGA 491939 Query 101809 ACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCC 101868 | |||| |||| ||||| || || || | |||||| | |||||| || Sbjct 491940 TCTCTGCAGAGCTTGGAAACTGCCTTCGATCTCCTTCAAACTGTCGTTGATGCCATCTCC 491999 Query 101869 GCCACAAATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTC 101928 ||||| || || ||||| || |||| || ||| | || ||||| | ||||| ||| Sbjct 492000 TCCACAGATTGGGATGAAACCATACAGCAGATGAGTAAGATTGGGGATGGGCACACGGTC 492059 Query 101929 CACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 || || || || | || || |||||||| ||||| || || Sbjct 492060 AACGGGGAACTTCCTTGGGTAGACACCCCATTCAACAAAGTAGGC 492104 >seq713 Length=456993 Score = 98.7 bits (108), Expect = 8e-16 Identities = 311/470 (66%), Gaps = 18/470 (4%) Strand=Plus/Plus Query 23537 TTGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGC 23596 ||| ||||| || | | |||| || | ||||||| | ||| || |||||||| | ||| Sbjct 320422 TTGAACGTATTC-TCGACCTTCACCAATTGCACGTAGGCGCAACGGTCAAACCACCTTGC 320480 Query 23597 GTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAA 23656 ||||| |||||| || |||| | | ||||| ||||| | || || ||||||| ||| Sbjct 320481 GTGTTGTTCCCAGGGTACGTCATGGTTCTCCCAATCTTTTAATCCACCATCGCAATAAAA 320540 Query 23657 ACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGG 23716 ||| ||| |||| |||| || |||||| |||| || || || || | || || || Sbjct 320541 ACACTTGGTTTTGTCTCCCTGACCAGTGTAA-AAAAGCCAGCCTCGGCGAGTTCTTCAGG 320599 Query 23717 CTTTTGTTTTAAACTAACCGGCCAATCCACAAAAGTTTTTAAACGTGCAGACTCGG-TGC 23775 |||||| | | ||||| || |||| | || ||||| | || | ||| Sbjct 320600 TTTTTGTCGCATGCATCGTGGCCAGTCTTTAAAACTGCGTAGTCGTGCGGCTTCAGATGC 320659 Query 23776 TGTATTTAGGGTGCATGGGGCCGAACATTACACGC----GACGATCCGCATTCATCTTGA 23831 ||| ||||||| ||| ||| ||| || || || | ||| | | | Sbjct 320660 A-TATCGTGGGTGCACGGGACCGGCCAT-ACGCGGCGGAGAGGTACCGGAGGGAGCGGCG 320717 Query 23832 TTAGCAACA-ACTTGCACTGGTGC-AGGGGTTTGATTCTGTTG-TGCAGTA---TTCTGT 23885 ||| || ||| | |||| | | | |||| || ||||||| ||| | Sbjct 320718 CGGGCACCACACTCGTCCTGGCCCGAACTACCCGTGTCTGCTGCTGCAGTACCGTTCAAT 320777 Query 23886 T---GCACAAACGGGCACTGCGGTGCCCATCGTTTATGATCTACGGCCGGGTCATCGCCC 23942 | ||||||| |||||||| || ||||| || | ||| || || |||||||||||| Sbjct 320778 TTGCGCACAAATGGGCACTGTGGCGCCCAACGCTGATGGTCCTTCGCAGGGTCATCGCCC 320837 Query 23943 TCCAACCAGCGCATTATTTCCACTTTGCAAAACGCGCAGCGCACCTCGTC 23992 |||| ||| | ||| || |||||||| || || ||||| || || || || Sbjct 320838 TCCACCCACCTCATAATCTCCACTTTACAGAAAGCGCAACGGACTTCATC 320887 >seq1732 Length=1186882 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||| || || |||||||| || ||||| ||||| || |||| |||||| Sbjct 785445 CACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCTGACAAAGTTCGGCCATCTTC 785386 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 |||||||||||| ||| | ||||| | ||| || || ||| | || |||||||| Sbjct 785385 CAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTG 785326 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| || || | ||| | || |||||| || | || ||||| || Sbjct 785325 AATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACCTCGAGAGTGATGGTCTT 785266 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||||||||| || ||||| Sbjct 785265 ACCAGTCAAAGTTTTGACAAATATCTGCAT 785236 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || |||||||| || |||||||| ||| || ||| |||||| Sbjct 787034 CACCAAGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTC 786975 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||| || ||||| || | ||||| | ||| || || ||| | |||||| ||||| Sbjct 786974 CAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTG 786915 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 || || ||||| | ||| | || |||||| || | || |||||||| Sbjct 786914 GATCTTGGCCTTCACATTTTCAATCGTGTCAGAAGGTTCAACCTCAAGAGTGATGGTTTT 786855 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| ||||| |||||||| || || ||||| Sbjct 786854 GCCAGTCAAAGTTTTGACGAAGATCTGCAT 786825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419574947529276