Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1772 102 7e-17 >seq1772 Length=243193 Score = 102 bits (112), Expect = 7e-17 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTT 13478 |||||| || || || || ||| | ||||| || || || | ||| ||||| ||||| | Sbjct 41282 AATATATGTGTCAAT-AAGAAGAGAGTACATCTCAGAGTGTACATTCTCCATGGCTATCT 41224 Query 13479 GGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCT 13537 |||||||||| || |||||||| || | || |||||||| ||| | || | ||| | Sbjct 41223 GGAAACCATAGAAGCATCTAGCTTCAGTCACTTGAACTTCTTGAG-AGAAACGTTCAACC 41165 Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 | |||||| || || ||||| || ||||||||| ||||| || | ||||| ||||| Sbjct 41164 AGGTTTTCATTGACAATCCCATCGGAAGCAGCAAAGAAAGCCAGCACATGCTTGATAAA 41106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969814775192