Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1732 167 5e-36 seq535 154 3e-32 seq1772 84.2 5e-11 >seq1732 Length=1186882 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || ||||||||||| || ||||| || Sbjct 785465 ATACCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCT 785406 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| || ||||| | |||||| |||||||| || || | ||| || ||||| Sbjct 785405 GACAAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGG 785346 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| |||||||| || || ||||||||||| | || || |||||| Sbjct 785345 GGGATACCCTCTTTGTCCTGAATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCA 785286 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| | ||||| |||||||||||||| Sbjct 785285 ACCTCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCAT 785236 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||||| ||| ||||||||||| || || |||||| Sbjct 785237 ATACCACCTCGCAGACGGAGCACAAGATGTAGTGTGGATTCTTTCTGGATGTTGTAGTCA 785178 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | || || |||||||| || || | ||| || || ||| Sbjct 785177 GAAAGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGA 785118 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || ||||||||||| | || || |||||| Sbjct 785117 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCA 785058 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || |||||||| || || |||||||||||||| Sbjct 785057 ACTTCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCAT 785008 Score = 163 bits (180), Expect = 7e-35 Identities = 175/230 (76%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || |||||||| |||||||| |||||| Sbjct 785692 ATACCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCA 785633 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||||| |||||||| ||||| || || | ||| || ||||| Sbjct 785632 GAAAGAGTGCGTCCGTCTTCTAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGG 785573 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| || || || | ||||| ||| || Sbjct 785572 GG-ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCA 785514 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| | || ||||| || |||||||| Sbjct 785513 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785464 Score = 163 bits (180), Expect = 7e-35 Identities = 175/230 (76%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | ||| ||||||||||| || || |||||| Sbjct 786826 ATACCTCCTCGCAGACGGAGCACAAGATGAAGTGTGGATTCTTTCTGGATGTTGTAGTCA 786767 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||| | |||||||| ||||| || || | ||| || ||||| Sbjct 786766 GAAAGAGTGCGTCCGTCTTCCAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGG 786707 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| || || || | ||||| |||||| Sbjct 786706 GG-ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGTTCA 786648 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| | || ||||| || |||||||| Sbjct 786647 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 786598 Score = 159 bits (176), Expect = 8e-34 Identities = 174/230 (76%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || || |||||||| || || ||||| Sbjct 786146 ATACCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCG 786087 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||| ||||| || ||||| |||||||| | ||| || ||||| Sbjct 786086 GAAAGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGG 786027 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| || || || | ||||| ||| || Sbjct 786026 GG-ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCA 785968 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| | || ||||| || |||||||| Sbjct 785967 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785918 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || |||||||| ||||| || |||||||| || || | |||||| Sbjct 784763 AGAACAAGATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAGTGTGCGGCCGTCT 784704 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || ||||| || || || | | || ||||| ||||| || ||||||||||| Sbjct 784703 TCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCTTTATCT 784644 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| |||||||| | ||| ||| || || || || || |||||||| Sbjct 784643 TGAATTTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCGACTTCAAGCGTAATAGTT 784584 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | |||||||| || |||||||| Sbjct 784583 TTACCCGTCAAGGTTTTTACGAAAATCTGCAT 784552 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| |||||||| ||||| || ||||| | |||||||| | || || ||| Sbjct 787476 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGAGTGCGTCCGTCTTCCAACTGCTTGCCA 787417 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || ||||| || || ||||| || ||||| ||||| ||||| Sbjct 787416 GCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTG 787357 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||| || ||||| || ||||||||||| ||||| | || Sbjct 787356 ACGTTCTCAATAGTATCCGAAGGCTCAACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTC 787297 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 787296 TTTACGAAGATCTGCAT 787280 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || ||||||||||| || || ||||| Sbjct 785919 ATACCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCC 785860 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | || || ||||| || || || | ||| || ||||| Sbjct 785859 GAAAGAGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGG 785800 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| ||||| || | ||||| ||| || Sbjct 785799 GG-ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATAGTATCCGAAGGCTCA 785741 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| | || ||||| || |||||||| Sbjct 785740 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 785691 Score = 138 bits (152), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || ||||||||||| || ||||| || Sbjct 786372 ATACCACCTCGCAGACGGAGCACAAGATGAAGGGTTGATTCTTTCTGGATGTTATAATCT 786313 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || || || ||||| |||||||| | ||| || || || Sbjct 786312 GACAATGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCTGG- 786254 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| |||||||||||||| | ||| || || || Sbjct 786253 GGGATGCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTGTCAGACGGCTCA 786194 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||| || || || || |||||||| Sbjct 786193 ACCTCCAGAGTGATGGTCTT-CCAGTAAGGGTCTTAACGAAAATCTGCAT 786145 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || || |||||||| || ||||| || Sbjct 786599 ATACCACCTCGCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTATAATCT 786540 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || || || ||||| |||||||| | ||| || || || Sbjct 786539 GACAATGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCTGGG 786480 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| |||||||||||||| | ||| || || || Sbjct 786479 GG-ATGCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTGTCAGACGGCTCA 786421 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||| || || || || |||||||| Sbjct 786420 ACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTAACGAAAATCTGCAT 786371 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| || || | || |||||||||||||| ||||| || || || || | ||| || || Sbjct 784989 TACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAGAGGGTGCGACCATCCTC 784930 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || |||||| ||||| || || | | ||| ||||| || || || || ||||| || || Sbjct 784929 TAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATACCCTCTTTGTCTTG 784870 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || || || ||||| || | || || ||| || || || || ||||| ||||| Sbjct 784869 GATTTTAGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACTTCAAGGGTAATCGTCTT 784810 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || ||||| || || |||||||| Sbjct 784809 ACCAGTGAGAGTTTTCACGAAAATCTGCAT 784780 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || | ||| | || ||||| | || || ||| Sbjct 787021 GTCGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTGCTTGCCA 786962 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || ||||| || || ||||| || ||||| ||||| || || Sbjct 786961 GCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 786902 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || |||||| ||||| || || || || || ||||| | ||| Sbjct 786901 ACATTTTCAATCGTGTCAGAAGGTTCAACCTCAAGAGTGATGGTTTTGCCAGTCAAAGTT 786842 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 786841 TTGACGAAGATCTGCAT 786825 >seq535 Length=1858795 Score = 154 bits (170), Expect = 3e-32 Identities = 175/231 (76%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||||| | ||| |||| ||| | |||||||||||| |||||||||||||| Sbjct 56743 ATTCCACCTCTTAACTTAAA-ACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCG 56801 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTT-CCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 || || || | || ||||| ||||| || || || || || | || ||||| ||||| Sbjct 56802 GAAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGG 56861 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || ||||| ||||| || ||||| ||||||||||||||||| | ||| || || || Sbjct 56862 TGGAATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTC 56921 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || || || ||||| | ||||| ||||| || ||||| Sbjct 56922 AACTTCTAAAGTTATTGT-TTTCCAGTCAAGGTTTTGACAAAGATTTGCAT 56971 Score = 154 bits (170), Expect = 3e-32 Identities = 175/231 (76%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||||| | ||| |||| ||| | |||||||||||| |||||||||||||| Sbjct 1714245 ATTCCACCTCTTAACTTAAA-ACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCG 1714187 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTT-CCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 || || || | || ||||| ||||| || || || || || | || ||||| ||||| Sbjct 1714186 GAAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGG 1714127 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || ||||| ||||| || ||||| ||||||||||||||||| | ||| || || || Sbjct 1714126 TGGAATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTC 1714067 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || || || ||||| | ||||| ||||| || ||||| Sbjct 1714066 AACTTCTAAAGTTATTGT-TTTCCAGTCAAGGTTTTGACAAAGATTTGCAT 1714017 >seq1772 Length=243193 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || || || ||||| | | ||||| || || || ||||| || || || |||| | Sbjct 41121 CTGGCTTTCTTTGCTGCTTCCGATGGGATTGTCAATGAAAACCTGGTTGAACGTTTCTCT 41180 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || || | ||||||| ||||| || || || ||||||||||| || || ||| Sbjct 41181 CAAGAAGTTCAAGTGACTGAAGCTAGATGCTTCTATGGTTTCCAGATAGCCATGGAGAAT 41240 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 | || || ||||||||| ||| | || || || ||||| Sbjct 41241 GTACACTCTGAGATGTACTCTCTTCTTATTGACACATATAT 41281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151363053508368