Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1843 156 4e-33 seq1046 84.2 2e-11 >seq1843 Length=1107702 Score = 156 bits (172), Expect = 4e-33 Identities = 479/732 (65%), Gaps = 24/732 (3%) Strand=Plus/Minus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCC 30291 |||||||| || |||||||| ||| || | | || | ||| || ||| ||||| Sbjct 492101 TACTTTGTTGAATGGGGTGTCTACCCAAGGAAGTTCCCCGTTGACCGTGTGCCCATCCCC 492042 Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351 || ||||| ||||| ||||||| || | || |||| || |||||||| || ||||| Sbjct 492041 AATCTTACTCATCTGCTGTATGGTTTCATCCCAATCTGTGGAGGAGATGGCATCAACGAC 491982 Query 30352 AGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAG 30411 || || ||| | | || || | ||| | || | ||| ||| || | || Sbjct 491981 AGTTTGAAGGAGATCGAAGGCAGTTTCCAAGCTCTGCAGAGATCATGCAGCGGCAGGGAA 491922 Query 30412 GATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTG 30471 ||||| || || | || |||||| ||||| || || ||||||||||| || || || Sbjct 491921 GATTTCAAGGTATCTATCCACGATCCTTGGGCTGCACTCCAAAAACCACAGAAGGGTTTG 491862 Query 30472 GGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACAC 30531 | ||| |||| || || || || || || |||||| ||||| | | ||| | Sbjct 491861 TCATCCTGGAACGAGCCTTACAAGGGTAACTTCGGCCAATTGATGATGTTGAAACAAGCG 491802 Query 30532 AATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCTTT 30591 | || ||||| | ||| || || ||| |||| || ||||| || ||||| ||||| Sbjct 491801 AGACCAGACCTGAAGATCTTGCCTTCTGTTGGTGGATGGACCCTGGCTGACCCGTTCTTC 491742 Query 30592 AAATTGAGTTCTGCCGAA---AATCG-CGCCGTTTTCGTTGAGTCCG-CACGAGAGTATT 30646 || | ||| |||| || | | ||| ||||||| || | || || | | Sbjct 491741 TTTTTCA---CTGACGAAGTGAAGAGACACCG-CTTCGTTGCTTCAGTCA----AGGACT 491690 Query 30647 TGCGC---ACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTA 30703 | | | || ||||| || || || || | ||||| || ||||| || || || |||| Sbjct 491689 TCCTCGAAACCTGGAAGTTCTTCGATGGTGTTGACATTGATTGGGAATTCCCTGGTGGTA 491630 Query 30704 AAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACA--TATGTGCAGTT 30761 |||| || || || || | || | || ||| | | || ||| || || ||| | Sbjct 491629 AAGGAGCCAACCCTGATCTCGGTGCCCCTGAAGACG-----GTCACATCTACGTACAGCT 491575 Query 30762 ATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCA 30821 |||| || |||||| | ||| | ||||| |||||| | || || || || ||| | Sbjct 491574 GATGAAGGAACTCAGACAGATGTTGAACGAGCTTTCTGCCAAGACTGGTAAGAAGTACGA 491515 Query 30822 GCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAATGC 30881 | || || || || ||| | || | || || ||| | || | || || | || Sbjct 491514 ATTGACTTCTGCTATCAGCTCCGGTTGGGACAAGATCCAGGTTGTGGACTACAAAGAAGC 491455 Query 30882 GCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAA 30941 || |||| | |||||||| || | |||| || || || || |||||||||||||| Sbjct 491454 TCAGCAGTACATGGATCACATCTTCTTGATGAGTTATGACTTCAAGGGCGCTTGGTCTAA 491395 Query 30942 C-ACGGACTTGG 30952 | || |||||| Sbjct 491394 CGACACACTTGG 491383 >seq1046 Length=465179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | |||||| | ||| || || || ||| |||||||| ||||||||||||| Sbjct 190241 ACCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGA 190182 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || |||| ||| ||||| || | || | ||| ||||| || || Sbjct 190181 GAGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGG 190122 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || |||||| || || ||| | | | ||||| || | | ||| Sbjct 190121 GATTCCCTCTTTGTCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCTGAGGCTTCCAC 190062 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || ||||||||||| ||||| ||||| || || |||||||| || Sbjct 190061 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGT 190011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238898938396