Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1946 125 4e-24 seq1 118 6e-22 seq2045 114 7e-21 seq1909 114 7e-21 seq1801 113 2e-20 seq629 113 2e-20 seq2174 111 8e-20 seq1997 105 3e-18 >seq1946 Length=127195 Score = 125 bits (138), Expect = 4e-24 Identities = 79/86 (92%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 7637 AAAAATAACATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 7578 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 7577 CTCTAACCAACTGAGCTAATGGGCCG 7552 Score = 125 bits (138), Expect = 4e-24 Identities = 79/86 (92%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 8020 AAAAATCATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 7961 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 7960 CTCTAACCAACTGAGCTAATGGGCCG 7935 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8729 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8788 Query 11516 TGAGCTAATGGGCCGTCGACGATTGTG 11542 |||||||||||||||| | |||| ||| Sbjct 8789 TGAGCTAATGGGCCGTTGGCGATAGTG 8815 Score = 113 bits (124), Expect = 2e-20 Identities = 84/98 (86%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | |||| |||||||| |||||||||| ||||||||||||||||||||| Sbjct 3519 TAAAAAAGAATATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 3578 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538 |||||||| |||||||||||||| |||||| | |||| Sbjct 3579 GACGCTCTAACCAACTGAGCTAAAGGGCCGATGGCGAT 3616 Score = 107 bits (118), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| Sbjct 4226 TGGCCCATGAGGGGATCGAACCCGCGACCT-CGCGTTATTAGCACGACGCTCTAACCAAC 4284 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 4285 TGAGCTAATGGGCCG 4299 Score = 107 bits (118), Expect = 1e-18 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5604 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5663 Query 11516 TGAGCTAATGG 11526 ||||||||||| Sbjct 5664 TGAGCTAATGG 5674 >seq1 Length=3055912 Score = 118 bits (130), Expect = 6e-22 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | |||| |||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1515722 AAAAATGATATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 1515781 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 1515782 CGCTCTAACCAACTGAGCTAATGGGCCG 1515809 >seq2045 Length=436442 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 332858 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 332799 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 332798 TGAGCTAATGGGCCG 332784 >seq1909 Length=929321 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 878015 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 877956 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 877955 TGAGCTAATGGGCCG 877941 >seq1801 Length=377020 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 69098 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 69157 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 69158 TGAGCTAATGGGCC 69171 >seq629 Length=31406 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | |||| |||||||| |||||||||| ||||||||||||||||||||| Sbjct 30011 TAAAAAAGAATATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 30070 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||||||||||||| |||||| Sbjct 30071 GACGCTCTAACCAACTGAGCTAAAGGGCCG 30100 Score = 107 bits (118), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| Sbjct 30720 TGGCCCATGAGGGGATCGAACCCGCGACCT-CGCGTTATTAGCACGACGCTCTAACCAAC 30778 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 30779 TGAGCTAATGGGCCG 30793 >seq2174 Length=284405 Score = 111 bits (122), Expect = 8e-20 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 86499 TGGCCCATGAGGGGATCGAACCG-CGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 86441 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 86440 TGAGCTAATGGGCCG 86426 >seq1997 Length=207653 Score = 105 bits (116), Expect = 3e-18 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 50239 CCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAG 50180 Query 11520 CTAATGGGCC 11529 |||||||||| Sbjct 50179 CTAATGGGCC 50170 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483564130096