Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1732 123 2e-23 seq1046 122 8e-23 seq535 105 6e-18 seq2057 82.4 7e-11 >seq1732 Length=1186882 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| | |||||| || | ||| | || ||||| || || | ||||||||| | Sbjct 785006 CCACCTCGGAGTCGCAATACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATC--TG 784949 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || |||||| | ||||| || | ||||| |||| ||||||||||| | Sbjct 784948 AGAGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGGG 784889 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||| |||||||| | ||||| ||||| || ||| |||||| | | || | Sbjct 784888 GAATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAA 784829 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || || || ||||| ||||||||||| || |||||||| Sbjct 784828 CTTCAAGGGTAATCGTCTTACCAGTGAGAGTTTTCACGAAAATCTGCAT 784780 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||| ||||| | ||| || || || ||| | || |||| ||| ||||| Sbjct 784748 GTGGATTCTTTTTGAATGTTGTAGTCAGACAGTGTGCGGCCGTCTTCCAACTGCTTTCCT 784689 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| |||| |||||||||||||||||| |||||||| || | |||||| || || Sbjct 784688 GCGAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTGAATTTTAGCTTTA 784629 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | | ||||| |||| ||| || ||||| || || | ||| Sbjct 784628 ACATTTTCAATGGTGTCGGATGGCTCGACTTCAAGCGTAATAGTTTTACCCGTCAAGGTT 784569 Query 94991 TTCACAAAGATCTGCATG 95008 || || || ||||||||| Sbjct 784568 TTTACGAAAATCTGCATG 784551 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || ||||| || || | ||| || ||| || |||| | ||| || Sbjct 787034 CACCAAGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTC 786975 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 786974 CAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTG 786915 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || | | ||||||| | || || |||| ||||||||||| Sbjct 786914 GATCTTGGCCTTCACATTTTCAATCGTGTCAGAAGGTTCAACCTCAAGAGTGATGGTTTT 786855 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | |||||| || ||||||||||| Sbjct 786854 GCCAGTCAAAGTTTTGACGAAGATCTGCAT 786825 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || || ||||||| | | ||||| ||||||||||| |||||||| Sbjct 785163 ATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCCTTCTTT 785104 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | ||||||| | || || || | ||||| Sbjct 785103 GTCTTGGATCTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACTTCGAGAGTGAT 785044 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||||||||| || ||||| |||||||| Sbjct 785043 GGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCAT 785008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||| ||||| | || || ||| || |||| |||||| | ||||| || Sbjct 787248 GTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTGCGACCATCCTCTAATTGTTTGCCA 787189 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||| ||||| ||| |||| || || || | || || || ||| Sbjct 787188 GCAAAGATAAGACGCTGCTGGTCTGGGGGA-TACCCTCCTTATCTTGGATCTTGGCTTTG 787130 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||||| | || || || | |||||||| |||||||||||||| Sbjct 787129 ACGTTTTCAATGGTGTCAGATGGTTCAACCTCCAGAGTGATGGTCTTTCCAGTAAGAGTC 787070 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 787069 TTGACGAAGATCTGCAT 787053 >seq1046 Length=465179 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||| | | ||||||||| | || ||||||||||| | ||| ||||| Sbjct 190240 CCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAG 190181 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| |||||| || | ||||| | | |||||| ||||| || Sbjct 190180 AGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 190121 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || |||||||| || ||| ||||| | | || || Sbjct 190120 ATTCCCTCTTTGTCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCTGAGGCTTCCACC 190061 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| || || || ||||| || ||||||||||| Sbjct 190060 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 190014 >seq535 Length=1858795 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94802 AAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGC 94861 || |||| ||||||||||| || | ||| || ||| | ||| | ||| |||||| Sbjct 56995 AAATGCAGTGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGC 57054 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | || |||||| || || || || || |||||||| | |||| Sbjct 57055 TGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATT 57114 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || || ||||| ||| ||||| | | ||||| || | |||||||| || || Sbjct 57115 TTGGCTTTGACATTTTCGATTGTGTCTGAAGGTTCGACCTCGAGTGTGATGGTCTTACCG 57174 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| ||||| Sbjct 57175 GTCAGGGTCTTGACAAAGATTTGCAT 57200 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 94802 AAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGC 94861 || |||| ||||||||||| || | ||| || ||| | ||| | ||| |||||| Sbjct 1713993 AAATGCAGTGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGC 1713934 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | || |||||| || || || || || |||||||| | |||| Sbjct 1713933 TGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATT 1713874 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || || ||||| ||| ||||| | | ||||| || | |||||||| || || Sbjct 1713873 TTGGCTTTGACATTTTCGATTGTGTCTGAAGGTTCGACCTCGAGTGTGATGGTCTTACCG 1713814 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| ||||| Sbjct 1713813 GTCAGGGTCTTGACAAAGATTTGCAT 1713788 >seq2057 Length=347680 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 115609 TTGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGAT 115668 |||| ||||||||||||||||||||| ||||| ||||| || |||||||||| | Sbjct 63775 TTGCCCCAGGTGAGGATCGAACTCACGACCTTAAGATTATGAGACTTACGCGCTGCCAAC 63716 Query 115669 TGCGCTACTGGAGCT 115683 ||||||||||||||| Sbjct 63715 TGCGCTACTGGAGCT 63701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277773678560