Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq773 547 7e-152 seq513 295 7e-76 >seq773 Length=28057 Score = 547 bits (606), Expect = 7e-152 Identities = 499/620 (80%), Gaps = 17/620 (3%) Strand=Plus/Minus Query 311 GCCCGGATATGTGGCGACTCGACGCAGCGTCATACTAAAACTTGACGCTGACGCCCCTAC 370 ||| ||||||||| ||||| || |||||||||| |||||| ||| || | | |||| Sbjct 17137 GCCTGGATATGTGA-GACTCAACT-AGCGTCATAC-AAAACTCGACACTA--GTCACTAC 17083 Query 371 CCACTAAACCCTAAACCCCTTTCTCTTCTATCCTCTGATCCCCCATGGTACCGCCGTAAG 430 |||||||||||||||||||| |||||| ||||||||||||| ||||| | || || Sbjct 17082 TCACTAAACCCTAAACCCCTTA-TCTTCTGTCCTCTGATCCCCTGCGGTACGACTGTGAG 17024 Query 431 GCATTTCTTCGCGGGGGGAGGAATTAGCTGCCGCTCTTCCTTCTGGTGGCTAAGATGTTA 490 | ||| |||||| ||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 17023 GTATTACTTCGCAGGGGGAGGAGTTAGCTGCCGCTCTTCCTTCTGATGGCTAAGGTGTTA 16964 Query 491 TTTC--------TTCCTTCTAGTTTCTGTCATTCGCTCTT-TTCTTCTCAATGGATTGCA 541 ||| |||||||||| |||||| | |||||| ||||| || ||||| ||| Sbjct 16963 ATTCATCCTTCTTTCCTTCTAGCTTCTGTTCTCAGCTCTTCTTCTT-TCGATGGAACGCA 16905 Query 542 ACTCGGTAAGCACTTTTGTAGCAAAAGTGCTTGTGGCGTTCCAGGCAGCTTCTGATGACA 601 ||| |||||||||| || ||||| ||| |||| ||||||||||||||||| ||||||| Sbjct 16904 GCTCTGTAAGCACTTCGGTGGCAAACGTGGTTGTAGCGTTCCAGGCAGCTTCGGATGACA 16845 Query 602 GCATTGCTGCTACTATTATCTCTGGTTGGATTTTCCTCTTCAGGATATTCTCCAGCTCAT 661 |||| || | |||| | |||||||||||||||| |||||||||| ||||||| ||||| Sbjct 16844 GCATATCTTCGACTAGTGACTCTGGTTGGATTTTCTTCTTCAGGATCTTCTCCAACTCAT 16785 Query 662 CCCGATGTGGGTAAAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTC 721 | || |||| | |||||| |||||| | ||||| |||||||| || | |||| | | || Sbjct 16784 CACGCTGTGAATTAAAACGAGAGCACACGAAGAACACGTGCTCCGCGTTTTCAGTTATTC 16725 Query 722 CTGGGCAGGATGGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGA 781 |||||||||| ||||||| | || ||||| |||||| |||| ||||| ||| | || | Sbjct 16724 CTGGGCAGGACAGGCACTCCGAAGAGTTATCGTGCTTGAAGCGATGGAGGTACTCTCGAA 16665 Query 782 AACAGCCGTGTCCTGATAACATCTGTGT-AAGATAATAGTTGACCTCACCGTGACTCCGG 840 ||||||||||||| || | ||||||||| | |||| |||||||| |||||||| || ||| Sbjct 16664 AACAGCCGTGTCCCGACAGCATCTGTGTGATGATAGTAGTTGACTTCACCGTGTCTTCGG 16605 Query 841 TTTAGCCAAACGTTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCA 900 || |||||||||| ||| || ||||| ||||||||| ||||||| || || ||| | | Sbjct 16604 TTCAGCCAAACGTCGATTCTCGGTATTAGACGATGCATCCATCTTCCTTTGTCTGCAGTA 16545 Query 901 TCCCACTGTAGTTGCCATCG 920 |||||| || |||||||||| Sbjct 16544 TCCCACAGTTGTTGCCATCG 16525 >seq513 Length=745197 Score = 295 bits (326), Expect = 7e-76 Identities = 250/308 (81%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 613 ACTATTATCTCTGGTTGGATTTTCCTCTTCAGGATATTCTCCAGCTCATCCCGATGTGGG 672 |||| | |||||||||||||||| |||||||||| ||||||| |||||| || |||| Sbjct 683904 ACTAGTGACTCTGGTTGGATTTTCTTCTTCAGGATCTTCTCCAACTCATCACGTTGTGAA 683845 Query 673 TAAAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGAT 732 | ||||| |||||| ||||||| |||||||| || | |||| | | |||||||||||| Sbjct 683844 TTTAAACGAGAGCACACAAAGAACACGTGCTCCGCGTTTTCAGTTATTCCTGGGCAGGAC 683785 Query 733 GGGCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGT 792 |||||||| || ||||| |||||| |||| ||||| || | || |||||||||||| Sbjct 683784 GGGCACTCCAAAGAGTTATCGTGCTTGAAGCGATGGAGGTAATCTCGAAAACAGCCGTGT 683725 Query 793 CCTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACG 852 || || | ||||||||| ||||| |||||||| |||||||| || || || ||||||||| Sbjct 683724 CCCGACAGCATCTGTGTGAGATAGTAGTTGACTTCACCGTGTCTTCGCTTCAGCCAAACG 683665 Query 853 TTGATCCTTGGTATGAGACGATGCGTCCATCTACCATTCACTGTGGCATCCCACTGTAGT 912 | ||| || ||||| ||||||||||||||||| || || ||| | ||||||| || || Sbjct 683664 TCGATTCTCGGTATTAGACGATGCGTCCATCTTCCTTTGTCTGCAGTATCCCACAGTTGT 683605 Query 913 TGCCATCG 920 |||||||| Sbjct 683604 TGCCATCG 683597 Score = 269 bits (298), Expect = 3e-68 Identities = 246/304 (81%), Gaps = 15/304 (5%) Strand=Plus/Minus Query 311 GCCCGGATATGTGGCGACTCGACGCAGCGTCATACTAAAACTTGACGCTGACGCCCCTAC 370 ||| ||||||||| ||||| || |||||||||| |||||| ||| || | | |||| Sbjct 684529 GCCTGGATATGTGA-GACTCAACT-AGCGTCATACAAAAACTCGACACTA--GTCACTAC 684474 Query 371 CCACTAAACCCTAAACCCCTTTCTCTTCTATCCTCTGATCCCCCATGGTACCGCCGTAAG 430 |||||||||||||||||||| |||||| ||||||||||||| ||||| | || || Sbjct 684473 TCACTAAACCCTAAACCCCTTA-TCTTCTGTCCTCTGATCCCCTGCGGTACGACTGTGAG 684415 Query 431 GCATTTCTTCGCGGGGGGAGGAATTAGCTGCCGCTCTTCCTTCTGGTGGCTAAGATGTTA 490 | ||| |||||| ||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 684414 GTATTACTTCGCAGGGGGAGGAGTTAGCTGCCGCTCTTCCTTCTGATGGCTAAGGTGTTA 684355 Query 491 TTTC--------TTCCTTCTAGTTTCTGTCATTCGCTCTT-TTCTTCTCAATGGATTGCA 541 ||| |||||||||| |||||| | |||||| ||||| || ||||| ||| Sbjct 684354 ATTCATCCTTCTTTCCTTCTAGCTTCTGTTCTCAGCTCTTCTTCTT-TCGATGGAACGCA 684296 Query 542 ACTCGGTAAGCACTTTTGTAGCAAAAGTGCTTGTGGCGTTCCAGGCAGCTTCTGATGACA 601 ||| |||||||||| || ||||| |||||||| ||||||||||||||||| ||||||| Sbjct 684295 GCTCTGTAAGCACTTCGGTGGCAAACGTGCTTGTAGCGTTCCAGGCAGCTTCGGATGACA 684236 Query 602 GCAT 605 |||| Sbjct 684235 GCAT 684232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50948988482856