Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq2263 116 5e-22 seq1105 100 4e-17 >seq2263 Length=336373 Score = 116 bits (128), Expect = 5e-22 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 8908 TCCAGCAACCTTCGAAGAAGCCAAAAGTATATGCAAACAAGAAGGTGGAAGTCTTGCTGT 8967 |||||| |||||||| ||||||| || |||||||| |||||||||| ||||||||| Sbjct 181237 TCCAGCCACCTTCGATGAAGCCAGTTACATTTGCAAACAGGAAGGTGGAAATCTTGCTGT 181178 Query 8968 CGTTACCTCCGAGGATGCAGAAGATGTGAGTATTCATTATTTTTCGAGTATTAAATTCA 9026 ||| |||||| |||| | ||| ||||||||||| ||||||||| | |||| ||||| Sbjct 181177 CGTAACCTCCAAGGAGGTAGAGAATGTGAGTATTTATTATTTTTAGTTTATTTTATTCA 181119 Score = 100 bits (110), Expect = 4e-17 Identities = 203/298 (68%), Gaps = 10/298 (3%) Strand=Plus/Minus Query 9151 AATTGTACTAAAATAATTGTTTCTCACCAGGAAATGCTGAAGATTTGGAGGCATTCAAGC 9210 |||| ||||||| ||||||||| | |||||||| || | ||| || ||| || Sbjct 180510 AATTTTACTAAACCTTTTGTTTCTCCCTAGGAAATGTTGGCATTGTGGGCGCGTTCTGGC 180451 Query 9211 CCTATTCTAGACCCGACAAATGGATTGACTTCACAAGCTTACATCGGGATCCATAGCTTG 9270 ||| || | ||||| | | ||||||| | | ||||||| ||||| | || ||| Sbjct 180450 CCTGTTGTGAACCCGTCGCACGGATTGAATGCTCAAGCTTTTATCGGACTACAG---TTG 180394 Query 9271 AATGTAGAAGGTCACTGGGAAACAATCGATGGAAAATCTCCAAAATACATCAATTGGAGT 9330 | | | ||| |||||| || |||| | | ||| ||| | || ||||| Sbjct 180393 ACCTCATATGGT-----GGAAACTATTTATGGTAGGTATCCGCCTTACCTTAACTGGAG- 180340 Query 9331 CAAGAC-TGGGCAGGTGGACGACAACCGAGCACCCCTAGCGTTCAAAAGTGTGGTAGTTT 9389 | ||| ||| || | | |||||| || |||| | |||||||||||||||||| Sbjct 180339 CTCGACCTGGTGGGGAAGGCAGCAACCGGACAGCCCTGCCTATCAAAAGTGTGGTAGTTT 180280 Query 9390 GTTAAAACAAGGAGGAATGGATGATGTAGAATGTTCGTTTAAGCTCGGTTTCTTCTGC 9447 ||| ||| |||| |||||||| ||||| | |||| | || |||| |||||||||| Sbjct 180279 GTTGAAAGAAGGGGGAATGGACGATGTTCACTGTTACTACAAACTCGCTTTCTTCTGC 180222 >seq1105 Length=38493 Score = 100 bits (110), Expect = 4e-17 Identities = 197/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9167 TTGTTTCTCACCAGGAAATGCTGAAGATTTGGAGGCATTCAAGCCCTATTCTAGA-CCCG 9225 ||||||||| | ||||||||||| | | ||| || |||| ||| | || | || |||| Sbjct 1407 TTGTTTCTC-CTAGGAAATGCTGGCGTTGTGGGCGCGTTCAGGCC-TGTTGTTGAACCCG 1464 Query 9226 ACAAATGGATTGACTTCACAAGCTTACATCGGGATCCATAGCTTGAATGTAGAAGGTCAC 9285 | | ||||||| | | ||||||| ||||| |||| |||| | ||| Sbjct 1465 TCGCACGGATTGAATGCTCAAGCTTTTATCGGACTCCAG---TTGACTCATATGGGT--- 1518 Query 9286 TGGGAAACAATCGATGGAAAATCTCCAAAATACATCAATTGGAGTCAAGAC-TGGGCAGG 9344 |||||| || |||| | | ||| ||| | || ||||| | ||| ||| || Sbjct 1519 --GGAAACTATTTATGGTAGGTATCCGCCGTACCTTAACTGGAG-CTCGACCTGGTGGGG 1575 Query 9345 TGGACGACAACCGAGCACCCCTAGCGTTCAAAAGTGTGGTAGTTTGTTAAAACAAGGAGG 9404 | | ||||||| || |||| | ||||||||||||||||||||| | |||||| || Sbjct 1576 AAGGCAGCAACCGA-CAGCCCTGCCTATCAAAAGTGTGGTAGTTTGTTGAGACAAGGGGG 1634 Query 9405 AATGGATGATGTAGAATGTTCGTTTAAGCTCGGTTTCTTCTGC 9447 |||||| |||||| | |||| | || |||| |||||||||| Sbjct 1635 AATGGACGATGTACACTGTTACTACAAACTCGCTTTCTTCTGC 1677 Score = 86.0 bits (94), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 8908 TCCAGCAACCTTCGAAGAAGCCAAAAGTATATGCAAACAAGAAGGTGGAAGTCTTGCTGT 8967 |||||| || ||||| ||||||| || |||||||| |||||||||| ||||||||| Sbjct 433 TCCAGCTACATTCGATGAAGCCAGTTACATTTGCAAACAGGAAGGTGGAAATCTTGCTGT 492 Query 8968 CGTTACCTCCGAGGATGCAGAAGATGTGAGTATTCATTATTTTT 9011 ||| |||||| |||| | ||| |||| ||| || || ||||| Sbjct 493 CGTAACCTCCAAGGAGGTAGAGAATGTAAGTTTT--TTTTTTTT 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68321307191148