Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq1762 104 3e-18 seq2263 89.7 7e-14 >seq1762 Length=681593 Score = 104 bits (114), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 4825 AAAAAACCGAATTGTGATTCGTTGCTCGAGAA--AGCTGGTGGGGAAATATTCGGGAACC 4882 |||| ||| |||||||||| || |||||||| | || ||| ||| | |||| Sbjct 335861 AAAAGACCAAATTGTGATTGGTCCCTCGAGAATTAAAGAGTAGGGGAATTGCCCAAAACC 335802 Query 4883 TTTAACGAATGTATCCTGAAACTTATAGACCACGGGAACATTTATAGAGAAAACCTTTAG 4942 |||||||||||||||||| | | | |||| || |||| |||| ||||| ||||||||| Sbjct 335801 TTTAACGAATGTATCCTGGATCCTCAAGACAGCGAGAACCTTTACAGAGAGAACCTTTAG 335742 Query 4943 ACAGAGTCGACTGT 4956 |||||||||||||| Sbjct 335741 ACAGAGTCGACTGT 335728 >seq2263 Length=336373 Score = 89.7 bits (98), Expect = 7e-14 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 8745 TGAATATAATACAATTAAAATAATGAATACTCACAATCTCTGCAACCTTGAATTTATAAA 8804 |||||| |||| | | |||||||| |||||||||| ||||| | ||||| | | | Sbjct 181119 TGAATAAAATAAACTAAAAATAATAAATACTCACATTCTCTACCTCCTTGGAGGTTACGA 181178 Query 8805 CAGCAAGACTTCCACCTTCTTTTTCGCATATATTCTTAGCTTCATCGAAGGATGCTGGAG 8864 |||||||| |||||||||| | || ||| || | | ||||||||||||| |||||| Sbjct 181179 CAGCAAGATTTCCACCTTCCTGTTTGCAAATGTAACTGGCTTCATCGAAGGTGGCTGGAT 181238 Query 8865 TTGAATGAAATGTGTAT 8881 ||| ||||| ||| Sbjct 181239 AACGATGGAATGTATAT 181255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63303846197484