Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1861 89.7 8e-13 >seq1861 Length=151038 Score = 89.7 bits (98), Expect = 8e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCT 193940 || ||| | || ||||||||||| | || || | ||| |||| || | ||| Sbjct 22686 GCGAAGCTATACGGTTATTGGATAGTGGTAAACTACAGAGAGGCATACGGCATGTTCGCA 22627 Query 193941 AGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGT 194000 || ||| | |||||||| |||||| |||||| |||||||||| || || ||| | Sbjct 22626 TGTAACGGTCTGCTCTTCAACCACGAAAGTCCAAGGAGAGGTGAGAACTTCGTGACTAGG 22567 Query 194001 AAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGT 194060 ||||| || | ||| | | |||||| | | || | | || ||| | |||||| Sbjct 22566 AAGATCACGCGAGGAGTCGCCAAGATCACCCTGGGGCTGATGGAGTATCTGGAACTTGGT 22507 Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAG 194109 || || | ||||| |||||||||||||| || |||||| |||||| Sbjct 22506 AACCTGGACAGCAAGAGAGATTGGGGACACGCCAAAGATTATATTGAAG 22458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807531013721760