Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1772 100 3e-16 >seq1772 Length=243193 Score = 100 bits (110), Expect = 3e-16 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 || ||||||| |||| ||| ||| | ||||||| ||||||||||| |||||||| || Sbjct 41693 ATACAAACCT-CATCTCTAGATATCAGTTCATTACTGAATGTTAAACCAGGCATTAAACC 41635 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGG 21608 | ||||| | ||| || || || ||||| ||| ||||| |||||||| || || || | Sbjct 41634 ACGTTTTTTCATCCAGAAAATGGAGGCAAA-GCTGCCTGAGAAGAAAATTCCTTCGACTG 41576 Query 21609 CAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTTTTCT 21667 |||||||||| | | ||| ||| | |||| | | ||| | | | ||||||| Sbjct 41575 CAGCAAATGCGATAATTCGCTCAGCAAATGTTGCAGACTTGCTACCA-ATCCATTGCAGG 41517 Query 21668 GCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 ||||| | ||||| | || | |||| | || |||||||| || || || Sbjct 41516 GCCCAGTCAGCCTTCTTCTTCACACAAGGGAGAGTCTCAATAGCATTAAACAG 41464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531884869571040