Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1843 159 3e-34 seq535 147 2e-30 seq1732 96.9 3e-15 seq1046 91.5 1e-13 >seq1843 Length=1107702 Score = 159 bits (176), Expect = 3e-34 Identities = 332/492 (67%), Gaps = 2/492 (0%) Strand=Plus/Minus Query 55824 GTTGCCGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTT 55883 |||| ||| || ||||| || |||||||| || | || || || || || || || Sbjct 492110 GTTGGCGCCTACTTTGTTGAATGGGGTGTCTACCCAAGGAAGTTCCCCGTTGACCGTGTG 492051 Query 55884 CCCACTCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGC 55943 |||| || ||||| | || | || || || ||||| || || || || || || ||| Sbjct 492050 CCCATCCCCAATCTTACTCATCTGCTGTATGGTTTCATCCCAATCTGTGGAGGAGATGGC 491991 Query 55944 ATTAACGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCG 56003 || ||||||||| | ||| ||| || ||||| |||| || ||| |||| || Sbjct 491990 ATCAACGACAGTTTGAAGGAGATCGAAGGCAGTTTCCAAGCTCTGCAGAGATCATGCAGC 491931 Query 56004 GGTCGAGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAA 56063 || | || || ||||| || || || || || || |||||||| ||||||| || || Sbjct 491930 GGCAGGGAAGATTTCAAGGTATCTATCCACGATCCTTGGGCTGCACTCCAAAAACCACAG 491871 Query 56064 AAACAAGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCT 56123 || || | | |||||||| || ||||| || ||||| || ||||||||| Sbjct 491870 AAGGGTTTGTCATCCTGGAACGAGCCTTACAAGGGTAACTTCGGCCAATTGATGATGTTG 491811 Query 56124 AAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTATCCGAT 56183 |||| |||| || | | || | ||||||| | ||||| ||||| | | || Sbjct 491810 AAACAAGCGAGACCAGACCTGAAGATCTTGCCTTCTGTTGGTGGATGGACCCTGGCTGAC 491751 Query 56184 CCGTTCTTTTACTTTCAC-GATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTCGA 56242 |||||||| | |||||| || | || || | | || || | ||| ||| || Sbjct 491750 CCGTTCTTCTT-TTTCACTGACGAAGTGAAGAGACACCGCTTCGTTGCTTCAGTCAAGGA 491692 Query 56243 GTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGG 56302 || | | |||||||| || ||||||||||| ||||| || ||||| || || || || Sbjct 491691 CTTCCTCGAAACCTGGAAGTTCTTCGATGGTGTTGACATTGATTGGGAATTCCCTGGTGG 491632 Query 56303 AAAGGGGGCCAA 56314 || || ||||| Sbjct 491631 TAAAGGAGCCAA 491620 >seq535 Length=1858795 Score = 147 bits (162), Expect = 2e-30 Identities = 178/236 (75%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||||||| | || || | ||||| ||| ||| | Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAG-CCATC 56914 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || ||| ||| ||| |||||||| || || || || || || Sbjct 56913 AGACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCA 56854 Query 24110 ACAGAGACTGATTTACGGCGGC-AAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 ||| ||| |||| | || ||| |||||||| ||||||| | | | | ||| |||| Sbjct 56853 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATA 56794 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 | |||||||||||||||||| | |||||||| ||||| || ||||| ||| | ||| Sbjct 56793 ATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAA 56739 Score = 147 bits (162), Expect = 2e-30 Identities = 178/236 (75%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||||||| | || || | ||||| ||| ||| | Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAG-CCATC 1714074 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || ||| ||| ||| |||||||| || || || || || || Sbjct 1714075 AGACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCA 1714134 Query 24110 ACAGAGACTGATTTACGGCGGC-AAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 ||| ||| |||| | || ||| |||||||| ||||||| | | | | ||| |||| Sbjct 1714135 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATA 1714194 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 | |||||||||||||||||| | |||||||| ||||| || ||||| ||| | ||| Sbjct 1714195 ATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAA 1714249 >seq1732 Length=1186882 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| || || || ||| | ||||| | ||||||||| | | Sbjct 784552 ATGCAGATTTTCGTAAAAACCTTGACGGGTAAAACTATTACGCTTGAAGTCGAGCCATCC 784611 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| || ||| || ||||||||||| ||||| ||||| Sbjct 784612 GACACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAGATCAG 784671 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG-AAAC-GTCAGCGATTATA 24168 || || |||| | || || ||||| | ||||| | | | | || ||| || || | Sbjct 784672 CAACGATTGATCTTCGCAGGAAAGCAGTTGGAAGACGGCCGCACACTGTC--TGACTACA 784729 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||||||||||||||| || Sbjct 784730 ACATTCAAAAAGAATCCAC 784748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || |||||||| | ||||| ||| | Sbjct 784780 ATGCAGATTTTCGTGAAAACTCTCACTGGTAAGACGATTACCCTTGAAGTTGAGCCTTCA 784839 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || || || |||||||| || || || || ||||| Sbjct 784840 GACACTATCGAGAATGTTAAGGCTAAAATCCAAGACAAAGAGGGTATTCCCCCAGATCAG 784899 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || || || ||| | || |||| | | | || ||||||||| Sbjct 784900 CAGCGATTGATCTTCGCTGGTAAACAATTAGAGGATGGTCGCACCCTCTCAGATTATAAC 784959 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| |||||||| || |||| Sbjct 784960 ATTCAGAAAGAATCGACCCTTCA 784982 >seq1046 Length=465179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || |||||||| | || || ||| | || ||| |||| || || ||| Sbjct 190013 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTGGAAGCCTC 190072 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || |||||| |||||||| || || || || || || Sbjct 190073 AGACACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCA 190132 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | || || || || | ||||||| | | | || ||||| || Sbjct 190133 GCAACGTCTTATCTTCGCTGGTAAACAGTTGGAAGATGGCCGTACTCTCTCTGATTACAA 190192 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| ||||| || | || || ||| | || ||||||||||| Sbjct 190193 CATCCAAAAGGAATCCACCCTCCACTTGGTGCTCAGGTTGAGAGGAGG 190240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429923445331380