Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1843 210 2e-49 seq713 147 2e-30 seq1732 98.7 8e-16 seq535 84.2 2e-11 >seq1843 Length=1107702 Score = 210 bits (232), Expect = 2e-49 Identities = 584/881 (66%), Gaps = 21/881 (2%) Strand=Plus/Minus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 || || ||||| |||||||| || ||| | || ||||| | ||| ||||| | Sbjct 492104 GCCTACTTTGTTGAATGGGGTGTCTACCCAAGGAAGTTCCCCGTTGACCGTGTGCCCATC 492045 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 |||||| | | |||||| |||| || || || || || || || || || || | ||| Sbjct 492044 CCCAATCTTACTCATCTGCTGTATGGTTTCATCCCAATCTGTGGAGGAGATGGCATCAAC 491985 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | | || || | || |||||||| | || ||||| | || |||| ||| Sbjct 491984 GA--CAGTTTGAAGGAGATCGAAGGCAGTTTCCAAGCTCTGCAGAGATCATGCAGCGGCA 491927 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 | | ||| || ||||| | || ||||| |||||||| ||| | |||||||| ||||||| Sbjct 491926 GGGAAGATTTCAAGGTATCTATCCACGATCCTTGGGCTGCACTCCAAAAACCACAGAAGG 491867 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 | |||| | |||||||| || ||||| || ||||| |||||||||||| | || Sbjct 491866 GTTTGTCATCCTGGAACGAGCCTTACAAGGGTAACTTCGGCCAATTGATGATGTTGAAAC 491807 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534 || | || || | || || || || ||| |||| || ||||| || | || ||| Sbjct 491806 AAGCGAGACCAGACCTGAAGATCTTGCCTTCTGTTGGTGGATGGACCCTGGCTGA-CCCG 491748 Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTT 32593 || | || | ||| |||| | || | ||| || || | ||| ||||| || || Sbjct 491747 TTCTTCTTTTTCACTGACGAAGTGAAGAGACACCGCTTCGTTGCTTCAGTCAAGGACTTC 491688 Query 32594 TTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAA 32653 | | ||||| ||||| || || || |||||||||||||| ||||| || || ||| Sbjct 491687 CTCGAAACCTGGAAGTTCTTCGATGGTGTTGACATTGATTGGGAATTCCCTGGTGGTAAA 491628 Query 32654 GGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTGTTA 32713 || |||||||| | |||||| | || |||| |||| ||| | || | Sbjct 491627 GGAGCCAACCCTGATCTCGGTGCCCCTGA---AGACGGTCACATCTACGTACAGCTGATG 491571 Query 32714 CAAGAATTGCGTTCTATGCTGGACGACCTTCAATTGCAA-ACGGGCAAAACGTACGAGTT 32772 | ||| | | ||| || |||| ||| | ||| || || || | |||||| || Sbjct 491570 AAGGAACTCAGACAGATGTTGAACGAGCTT-TCTGCCAAGACTGGTAAGAAGTACGAATT 491512 Query 32773 GACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGCGCA 32832 |||| || || || |||| ||||| || || ||| | || ||| || || Sbjct 491511 GACTTCTGCTATCAGCTCCGGTTGGGACAAGATCCAGGTTGTGGACTACAAAGAAGCTCA 491452 Query 32833 AAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAAC-A 32891 ||||| | ||| | || || | |||||||| ||||| || || || ||||||||| | Sbjct 491451 GCAGTACATGGATCACATCTTCTTGATGAGTTATGACTTCAAGGGCGCTTGGTCTAACGA 491392 Query 32892 CCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTACA 32951 | | || ||| | ||| | ||||||||| ||| ||||| ||| | || |||| Sbjct 491391 CACACTT-GGCCACCAGGCAGGTTTGTACGCCCCAGCATGGAACCCCAAGGAGACTTACA 491333 Query 32952 CCACAGATCACGCTGTTAAAT---TGTTAACAAGTCAAGGTG-TAGCTTCTTACAAAATC 33007 | || || || ||| |||| |||| | |||||||| |||| | | || || Sbjct 491332 CAACTGACTTCGGTGTCAAATTCCTGTTGGC---TCAAGGTGTTAGC-CCCAAGAAGATT 491277 Query 33008 ATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 | || || | || ||||| || || || ||||| || || Sbjct 491276 GTCGTTGGTGTTGCTATGTATGGACGAGGCTGGACTGGAGT 491236 >seq713 Length=456993 Score = 147 bits (162), Expect = 2e-30 Identities = 190/260 (73%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 109222 CCCGTGCATCCCAAATACGCAACGGAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCT 109281 |||||||| || ||| ||| | |||| ||||| | |||| |||| ||| ||||| Sbjct 320677 CCCGTGCACCCACGATATGCATCTGAAGCCGCACGACTACGCAGTTTTAAAGACTGGCCA 320618 Query 109282 CGTGGTTTGAAACAGCAACCCGATAAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAG 109341 || | || ||| |||| || |||| |||||||| || |||| |||||| || ||| Sbjct 320617 CGATGCATGCGACAAAAACCTGAAGAACTCGCCGAGGCTGGCTTTT-TTACACTGGTCAG 320559 Query 109342 GGCGATAAAACCAAATGTTTTTATTGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGAT 109401 || || |||||||| ||||||||||| || || || || ||||| |||||| | || Sbjct 320558 GGAGACAAAACCAAGTGTTTTTATTGCGATGGTGGATTAAAAGATTGGGAGAACCATGAC 320499 Query 109402 GAGCCGTGGAAACTGCACGCGCGTTGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAG 109461 | || ||| ||| ||||| | ||||||||||||||| | |||||| ||| | | Sbjct 320498 GTACCCTGGGAACAACACGCAAGGTGGTTTGACCGTTGCGCCTACGTG-CAATTGGTGAA 320440 Query 109462 GGTCGAGATTATGTGCAAAA 109481 |||||||| || || ||||| Sbjct 320439 GGTCGAGAATACGTTCAAAA 320420 >seq1732 Length=1186882 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || || || ||||| || |||| || | Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | ||||| |||||| || ||||| || ||||| ||| ||| Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | ||||| | ||| ||||||||||| ||||||| | ||| || | ||||||||| Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || ||||| || || | ||| | ||| | | ||||||| || Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGG 785462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || ||||| | ||||| ||||| ||||| | ||| ||| | | Sbjct 784552 ATGCAGATTTTCGTAAAAACCTTGACGGGTAAAACTATTACGCTTGAAGTCGAGCCATCC 784611 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| |||||| |||||||||||| | || |||||| Sbjct 784612 GACACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAGATCAG 784671 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| || | || | || || || || || ||||| | | || || | || || ||| Sbjct 784672 CAACGATTGATCTTCGCAGGAAAGCAGTTGGAAGACGGCCGCACACTGTCTGACTACAAC 784731 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||||||||| || || Sbjct 784732 ATTCAAAAAGAATCCAC 784748 >seq535 Length=1858795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| | || |||||| | || || | ||| ||| ||| | Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAG-CCATC 56914 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | |||||| ||||||| || ||||| || | || ||| || Sbjct 56913 AGACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCA 56854 Query 115405 GCAAAGACTTATTTATGCGGGCAAA-CAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||||| | || | || ||| || ||| | ||||||| | || | |||| |||| Sbjct 56853 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATA 56794 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 | ||||||||||| ||||| | ||| | || || || || |||| |||| Sbjct 56793 ATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAA 56744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| | || |||||| | || || | ||| ||| ||| | Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAG-CCATC 1714074 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | | |||||| ||||||| || ||||| || | || ||| || Sbjct 1714075 AGACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCA 1714134 Query 115405 GCAAAGACTTATTTATGCGGGCAAA-CAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||||| | || | || ||| || ||| | ||||||| | || | |||| |||| Sbjct 1714135 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATA 1714194 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 | ||||||||||| ||||| | ||| | || || || || |||| |||| Sbjct 1714195 ATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAA 1714244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425331579423520