Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1843 183 2e-41 seq1046 95.1 1e-14 seq1732 89.7 4e-13 seq535 84.2 2e-11 >seq1843 Length=1107702 Score = 183 bits (202), Expect = 2e-41 Identities = 576/881 (65%), Gaps = 21/881 (2%) Strand=Plus/Plus Query 96132 ACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCGCGGGTCCACG 96191 |||||||||||||| || || ||||| || || || || | ||| || ||| || Sbjct 491236 ACTCCAGTCCAGCCTCGTCCATACATAGCAACACCAACGACAATCTTCTTGGGGCTAACA 491295 Query 96192 CCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCTCGTTTGGGTTCCAA 96251 |||||| || ||||| || | ||| || |||| ||| || |||||||| Sbjct 491296 CCTTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCAT 491355 Query 96252 CTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAAT-GTTTGACCACGCGCCTTTAAA 96310 || ||||||| | |||| || || | | ||| ||||| ||||| || || Sbjct 491356 GCTGGGGCGTACAAACCTGCCTGGTGGCC-AAGTGTGTCGTTAGACCAAGCGCCCTTGAA 491414 Query 96311 ATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTCGTATTTTACTAC 96370 || || ||||| | || || | || | | ||| || || | | ||| | || || Sbjct 491415 GTCATAACTCATCAAGAAGATGTGATCCATGTACTGCTGAGCTTCTTTGTAGTCCACAAC 491474 Query 96371 AGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGTTTTGCCCGTTT- 96429 || ||||| |||| ||||| ||| ||||| |||||| | || || || | Sbjct 491475 CTGGATCTTGTCCCAACCGGAGCTGATAGCAGAAGTCAATTCGTACTTCTTACCAGTCTT 491534 Query 96430 -GCAGTTGCAACTCGTCTAACATCACGCGCAATTCCTTTAATAGAATGTT-GTACGTGTC 96487 |||| | ||||| |||||| | | |||||| | || ||| ||| ||| Sbjct 491535 GGCAGAA--AGCTCGTTCAACATCTGTCTGAGTTCCTTCATCAGC-TGTACGTAGATGTG 491591 Query 96488 AGCGTCGCGCTCTTTGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCGGAAATTCCCA 96547 | |||| || | ||||| |||||||| |||||||| || || |||||||| Sbjct 491592 ACCGTCT---TCAGGGGCACCGAGATCAGGGTTGGCTCCTTTACCACCAGGGAATTCCCA 491648 Query 96548 GTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGTCTAC 96607 || ||||| || || ||||| || ||||| | | || || |||| || | || Sbjct 491649 ATCAATGTCAACACCATCGAAGAACTTCCAGGTTTCGAGGAAGTCCTTGACTGAAGCAAC 491708 Query 96608 AAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATAGAA---CGGGTCGGACAGTGTCCA 96664 || ||| || | | | | |||| || || |||| |||||| | ||| ||||| Sbjct 491709 GAA---GCGGTGTCTCTTCACTTCGTCAGTGAAAAAGAAGAACGGGTCAGCCAGGGTCCA 491765 Query 96665 GCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTG 96724 || || | ||| |||| || || |||| ||| | || |||| | |||||| || Sbjct 491766 TCCACCAACAGAAGGCAAGATCTTCAGGTCTGGTCTCGCTTGTTTCAACATCATCAATTG 491825 Query 96725 ACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTAC 96784 || ||||| || ||||| ||||||||||| | |||| ||||| || |||||||| | Sbjct 491826 GCCGAAGTTACCCTTGTAAGGCTCGTTCCAGGATGACAAACCCTTCTGTGGTTTTTGGAG 491885 Query 96785 TGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTG 96844 ||| |||||||| ||||| |||| || || |||||| | ||| ||| || | || Sbjct 491886 TGCAGCCCAAGGATCGTGGATAGATACCTTGAAATCTTCCCTGCCGCTGCATGATCTCTG 491945 Query 96845 CAGCGCTTCAAAACTACC--GGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCA 96902 ||| |||| ||||| || | | | || || | ||||| | ||| || || ||| Sbjct 491946 CAGAGCTTGGAAACTGCCTTCGATCTCCTTCAAACTG--TCGTTGATGCCATCTCCTCCA 492003 Query 96903 CAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACC 96962 || || || || || || |||| || ||| | | ||||| | ||||| ||| || Sbjct 492004 CAGATTGGGATGAAACCATACAGCAGATGAGTAAGATTGGGGATGGGCACACGGTCAACG 492063 Query 96963 GGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 || || || | || || |||||||| ||||| || || Sbjct 492064 GGGAACTTCCTTGGGTAGACACCCCATTCAACAAAGTAGGC 492104 >seq1046 Length=465179 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | ||| || |||| || || ||||| |||||||| |||||||| || | Sbjct 190240 CCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAG 190181 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || || | ||||| || || ||||| || Sbjct 190180 AGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 190121 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || ||||| |||||| | | | ||||| || ||| Sbjct 190120 ATTCCCTCTTTGTCCTGGATCTTTGC--CTTCACATTTTCGATGGTGTCTGAGGCTTCCA 190063 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||||||| || || || ||||| || || ||||||||| Sbjct 190062 CCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 190013 >seq1732 Length=1186882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || || | ||| || || || || || || ||||| || || | | Sbjct 785462 CCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCTGAC 785403 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||||||||||||| ||| | ||||| ||||| ||||| || Sbjct 785402 AAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGG 785343 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||||| ||| || | | | ||||| || || Sbjct 785342 ATACCCTCTTTGTCCTGAATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACC 785283 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || |||| ||||||||||| |||||||| Sbjct 785282 TCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCAT 785236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || || | ||| || ||||| || || || ||||||||||| | Sbjct 785234 CCACCTCGCAGACGGAGCACAAGATGTAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAA 785175 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | || |||||| ||||| || ||||| ||| | ||||| ||||| ||||| Sbjct 785174 AGAGT----GCGTCCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGG 785119 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 ||| | ||| |||||||| || || || ||| || | | | ||||| || Sbjct 785118 AGGAATGCCTTCTTTGTCTTGGATCTTGGC--CTTTACATTTTCAATTGTGTCAGAAGGT 785061 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||| | ||||||||||| || || || || |||||||| |||||||| Sbjct 785060 TCAACTTCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCAT 785008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||||| || || || || || ||||||||||||| | Sbjct 787051 CCACCTCGGAGACGGAGCACCAAGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAC 786992 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| || ||||| || | ||||| ||||| ||||| || Sbjct 786991 AAAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGG 786932 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | ||||| || || Sbjct 786931 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACATTTTCAATCGTGTCAGAAGGTTCAA 786874 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||| || |||| |||||||| || |||||||| Sbjct 786873 CCTCAAGAGTGATGGTTTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 786825 >seq535 Length=1858795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || ||||||||||| || ||||||||||||| Sbjct 57425 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 57484 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || || || || | || || || || ||||| || Sbjct 57485 AGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 57544 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | ||||| |||||| Sbjct 57545 ATTCCCTCTTTGTCTTGGATTTTAGCT--TTGACGTTTTCAATTGTGTCAGAGGGCTCAA 57602 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| ||||| || |||| ||||||||||| || ||||| Sbjct 57603 CTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 57651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || ||||||||||| || ||||||||||||| Sbjct 1713563 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1713504 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || || || || | || || || || ||||| || Sbjct 1713503 AGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 1713444 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | ||||| |||||| Sbjct 1713443 ATTCCCTCTTTGTCTTGGATTTTAGCT--TTGACGTTTTCAATTGTGTCAGAGGGCTCAA 1713386 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| ||||| || |||| ||||||||||| || ||||| Sbjct 1713385 CTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 1713337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405076170924040