Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq1843 233 2e-56 >seq1843 Length=1107702 Score = 233 bits (258), Expect = 2e-56 Identities = 648/984 (66%), Gaps = 20/984 (2%) Strand=Plus/Plus Query 51462 TCGTTCGCGATCTGCCGATAGTCGACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCG 51521 ||||| || |||| || ||||| ||||| |||| | ||| || |||| | ||| || Sbjct 491134 TCGTTGGCAATCTCCCTGTAGTCCACCACACCATCCTGCCAAGTTCCTTTAACGGGACCA 491193 Query 51522 CCGGCGACGCCGCTGAACCAGTTCGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCCG 51581 || || || ||||| || || | || | ||| | || | |||||| Sbjct 491194 GTCGCTACACCAGTGAACGGATTGCCATCTTTGT---AACCGTTGACTCCAGTCCAGCCT 491250 Query 51582 CGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTCGAGAAGC 51641 || | ||||| || || || ||||| ||||||| || || || || | | || Sbjct 491251 CGTCCATACATAGCAACACCAACGACAATCTTCTTGGGGCTAACACCTTGAGCCAACAGG 491310 Query 51642 GAC--GACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACA 51699 | ||||| | | ||| || ||||| | || | |||||||||| || ||| ||| Sbjct 491311 AATTTGACACCGAA--GTCAGTTGTGTAAGTCTCCTTGGGGTTCCATGCTGGGGCGTACA 491368 Query 51700 GTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGA 51759 | ||||| ||| || | ||| ||||| || |||||||| || || |||| | Sbjct 491369 AACCTGCCTGGTGGCCAAGTGTGTCGTTAGACCAAGCGCCCTTGAAGTCATAACTCATCA 491428 Query 51760 GGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGT 51819 ||| |||| ||||| | | ||| || |||||| || || || || || || Sbjct 491429 AGAAGATGTGATCCATGTACTGCTGAGCTTCTTTGTAGTCCACAACCTGGATCTTGTCCC 491488 Query 51820 AGCCCGCGCTGATGGCGCTGGTCAACAGGTACGA---ACGGTTCGTGGCGGCGCTCAACT 51876 | || | |||||| || ||||| |||| || || |||| | | || Sbjct 491489 AACCGGAGCTGATAGCAGAAGTCAATTCGTACTTCTTACCAGTCTTGGCAGAA---AGCT 491545 Query 51877 CGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGG 51936 ||| | ||| | | || || ||| ||| ||||| | ||| || || | Sbjct 491546 CGTTCAACATCTGTCTGAGTTCCTTCATCAGCTGTACGTAGATGTGACCGTCT---TCAG 491602 Query 51937 GATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTC 51996 | | || || || || ||||| ||||| || || || || ||||| || | ||| || | Sbjct 491603 GGGCACCGAGATCAGGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACAC 491662 Query 51997 CGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAG-GTTGCGCGT 52055 | |||||||||||||| || || || || || || | |||||| | || | Sbjct 491663 CATCGAAGAACTTCCAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTCT 491722 Query 52056 TTGCTCGCGTC-GTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGG 52114 | || |||| ||| | ||||||||||| || | ||| ||||| || || | || || Sbjct 491723 TCACT-TCGTCAGTG-AAAAAGAAGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGG 491780 Query 52115 CAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTT 52174 || ||||| || || | || |||| | ||||| || || ||||| ||||| Sbjct 491781 CAAGATCTTCAGGTCTGGTCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTT 491840 Query 52175 GTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATC 52234 ||| || |||||||||| || | || ||||| ||||| || || || ||||| ||||| Sbjct 491841 GTAAGGCTCGTTCCAGGATGACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATC 491900 Query 52235 GTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGAAACT 52294 ||| || | ||||| || || |||||| ||| || | |||| |||| |||||| Sbjct 491901 GTGGATAGATACCTTGAAATCTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACT 491960 Query 52295 GTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCC 52354 | |||||| |||| |||||||||||||| || ||||| || || || ||||| || Sbjct 491961 GCCTTCGATCTCCTTCAAACTGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACC 492020 Query 52355 GTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTA 52414 ||||||||||| | || || || | ||||| | || ||||| || || | ||| Sbjct 492021 ATACAGCAGATGAGTAAGATTGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTA 492080 Query 52415 AACGCCCCATTCGACAAAGTAGGC 52438 || |||||||| ||||||||||| Sbjct 492081 GACACCCCATTCAACAAAGTAGGC 492104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537587098784160