Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1772 163 3e-35 seq2062 143 3e-29 seq1894 132 5e-26 seq602 132 5e-26 seq1720 131 2e-25 seq2133 129 7e-25 seq2367 120 3e-22 seq2106 120 3e-22 >seq1772 Length=243193 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||| || || | ||||| ||||| ||||| || ||||||||||| || || ||| Sbjct 41281 ATATATGTGTCAATAAGAAGAGAGTACATCTCAGAGTGTACATTCTCCATGGCTATCTGG 41222 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||| ||||||||||| || | || ||||||||||| || | || || || Sbjct 41221 AAACCATAGAAGCATCTAGCTTCAGTCACTTGAACTTCTTGAGAGAAACGTTCAACCAGG 41162 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || |||||||| || ||||| ||||||| | |||||| ||||| || Sbjct 41161 TTTTCATTGACAATCCCATCGGAAGCAGCAAAGAAAGCCAGCACATGCTTGATAAAGTGC 41102 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 ||||| || || || | ||||| || |||| ||| Sbjct 41101 CTCTCACTGTCCTTTAGAGTCTCCCAGTCTGATAAATC 41064 Score = 138 bits (152), Expect = 1e-27 Identities = 173/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || ||| |||||| | |||| ||||||| ||||| |||||||||||||| || | | Sbjct 41697 CGATATACAAACCT-CATCTCTAGATATCAGTTCATTACTGAATGTTAAACCAGGCATTA 41639 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 || ||||| || | ||| || || || ||||| || || || || || || ||||| | Sbjct 41638 AACCACGTTTTTTCATCCAGAAAATGGAGGCAAAGCTGCCTGAGAAGAAAATTCCTTCGA 41579 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281 | || |||||||| | ||| || || ||||| |||| || || || | ||||||| | Sbjct 41578 CTGCAGCAAATGCGATAATTCGCTCAGCAAATGTTGCAGACTTGCTACCAATCCATTGCA 41519 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 ||||| || || || ||||| | |||||| || || || ||||| ||||| ||| Sbjct 41518 GGGCCCAGTCAGCCTTCTTCTTCACACAAGGGAGAGTCTCAATAGCATTAAACAGG 41463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 |||||| || || | || | | || ||| ||||| |||||||| ||||| | ||||| Sbjct 42253 CTTTTCCCCAATAAGTTCCAAAAGTAGTCTGTCAGCAACAAATTCGATGTAGTCCGACAT 42194 Query 92956 CAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTC 93015 | || ||||||||||| || || | ||||| || || || || | ||| || | || Sbjct 42193 AAGTTCGCAATTCATTCCGAGTAGCCTGACAGGCAGTGCATCAGTGAGGAATTCCTGTTC 42134 Query 93016 GATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGA 93074 || || || || || || | ||| | || ||| | | |||| | || ||||| || | Sbjct 42133 AATGACTACTGCATCCTTAATGATCTGTAGTACACGT-TCTTTGCTTGGCTTTTGAACCA 42075 Query 93075 CATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 | | |||||||| ||||| || || ||||||||||| Sbjct 42074 CGTGGCGGTACATTAGACACGCGAAATCTGTATGTAAACC 42035 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || ||||| || |||||||| || || || || || || |||||||| ||||| || || Sbjct 40556 TCCACTTCCTCAACAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTCCCAAATATCA 40497 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGT 93709 ||||||| || || |||||||| ||||| |||||| || | || | || || | Sbjct 40496 GGATATTGGATAGGGAATATGACGAAACGGCGAGGGTTGTCCCTCAGCAGTGGTTCCTTT 40437 Query 93710 TGTGGGTCAAAC 93721 |||||||||||| Sbjct 40436 TGTGGGTCAAAC 40425 >seq2062 Length=302455 Score = 143 bits (158), Expect = 3e-29 Identities = 93/100 (93%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGT 126324 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 255917 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCTCTGGGAGCGT 255976 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364 ||||||||||||||||||||||||| || ||| ||||| Sbjct 255977 GGGTTCGAACCCCACACCTGACAAA--GTTTTTGCAATTT 256014 Score = 143 bits (158), Expect = 3e-29 Identities = 93/100 (93%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGT 126324 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 265989 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCTCTGGGAGCGT 266048 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364 ||||||||||||||||||||||||| || ||| ||||| Sbjct 266049 GGGTTCGAACCCCACACCTGACAAA--GTTTTTGCAATTT 266086 >seq1894 Length=1427675 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 746598 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 746657 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 746658 GTGGGTTCGAACCCCACACCTGACAAA 746684 >seq602 Length=1023821 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 243561 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 243502 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 243501 GTGGGTTCGAACCCCACACCTGACAAA 243475 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 780261 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 780320 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 780321 GTGGGTTCGAACCCCACACCTGACAAA 780347 >seq1720 Length=1083496 Score = 131 bits (144), Expect = 2e-25 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 61656 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 61597 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 61596 TGGGTTCGAACCCCACACCTGACAAA 61571 >seq2133 Length=203697 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 109214 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 109273 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||||||||||||||||||| || Sbjct 109274 TGGGTTCGAACCCCACACCTGACAATTT 109301 >seq2367 Length=138374 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct 58843 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGGTTTAAGTTCTGGTTCCCGAGAGGGAGC 58902 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||| ||||||||||||| Sbjct 58903 GTGGGTTCGAAACCCACACCTGACA 58927 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct 79532 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGGTTTAAGTTCTGGTTCCCGAGAGGGAGC 79473 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||| ||||||||||||| Sbjct 79472 GTGGGTTCGAAACCCACACCTGACA 79448 >seq2106 Length=128370 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct 17117 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGGTTTAAGTTCTGGTTCCCGAGAGGGAGC 17176 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||| ||||||||||||| Sbjct 17177 GTGGGTTCGAAACCCACACCTGACA 17201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556844122019040