Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1732 104 2e-17 seq713 100 2e-16 seq535 91.5 1e-13 >seq1732 Length=1186882 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||||||||| |||| || || ||||| || | || ||||| Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | ||||| |||||| |||||||| || | ||| || || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||| | ||| |||||||||||||||||| |||| || | |||||||| Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| || || ||| | ||| | |||||||| ||||| Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGG 785462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || |||||||| || | || ||||||||||| || | ||| ||||| Sbjct 785008 ATGCAGATATTTGTCAAGACTCTTACTGGCAAAACCATCACTCTCGAAGTTGAACCTTCT 785067 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | ||||| || || |||||||||||| |||| || || Sbjct 785068 GACACAATTGAAAATGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 785127 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||| | ||| ||||| || ||||||||| ||| | | || || || Sbjct 785128 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACTCTTTCTGACTACAAC 785187 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| ||||||||| | ||| | |||||||| ||||| Sbjct 785188 ATCCAGAAAGAATCCACACTACATCTTGTGCTCCGTCTGCGAGGTGG 785234 >seq713 Length=456993 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || || ||||| | || || | || ||||| || ||||| ||||| |||||||| Sbjct 320914 AATGGATTTTACTACCTCGGCCGTGGAGATGAAGTCCGTTGCGCTTTCTGTAAAGTGGAG 320855 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| | ||| |||||||||| ||||| || || ||| | || |||||||||||| Sbjct 320854 ATTATGAGGTGGGTGGAGGGCGATGACCCTGCGAAGGACCATCAGCGTTGGGCGCCACAG 320795 Query 105282 TGCCCGTTTTTGCGAAAA 105299 ||||| ||| |||| ||| Sbjct 320794 TGCCCATTTGTGCGCAAA 320777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 105482 ACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTACACCGGCAAAGGTGATAAAGT 105541 ||||| || || || | ||||| || || |||| ||||| || | || || ||| Sbjct 320606 ACAAAAACCTGAAGAACTCGCCGAGGCTGGCTTTTT-TACACTGGTCAGGGAGACAAAAC 320548 Query 105542 CAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCAAACGCCGACGAACCGTGGGA 105601 ||| |||||||||||||| || || | || ||||||| ||| |||| ||| ||||| Sbjct 320547 CAAGTGTTTTTATTGCGATGGTGGATTAAAAGATTGGGAGAACCATGACGTACCCTGGGA 320488 Query 105602 GGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAACTGGTCAAAGGACACGACTA 105661 |||| ||| | |||||||| || || | | ||| || |||| |||| | || || Sbjct 320487 ACAACACGCAAGGTGGTTTGACCGTTGCGCCTACGTGCAATTGGT-GAAGGTCGAGAATA 320429 Query 105662 CGTGCAGCGGGTGATTAGCGAAGCATG 105688 ||| || ||||||| ||||| || Sbjct 320428 CGTTCAAAAGGTGATTTCTGAAGCTTG 320402 >seq535 Length=1858795 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| |||| || ||||| || || | ||| || || Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGG-AAAACAATAACTTTAGAAGTTGAGCCATCA 56913 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | |||||| ||||||| |||||||| || |||| || ||| Sbjct 56912 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 56853 Query 111307 CAAAGGCTTATTTATGCGGGCAAA-CAATTGGAAGATT--CTAAAACTATGGCCGATTAT 111363 ||||| | || | || ||| || ||| |||||||| | | ||| | |||| ||| Sbjct 56852 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTT--CCGACTAT 56795 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||||| ||||||||||||||||| |||||||| || Sbjct 56794 AATATTCAAAAAGAATCTACACTGCATTTAGTTTT 56760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| |||| || ||||| || || | ||| || || Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGG-AAAACAATAACTTTAGAAGTTGAGCCATCA 1714075 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | |||||| ||||||| |||||||| || |||| || ||| Sbjct 1714076 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 1714135 Query 111307 CAAAGGCTTATTTATGCGGGCAAA-CAATTGGAAGATT--CTAAAACTATGGCCGATTAT 111363 ||||| | || | || ||| || ||| |||||||| | | ||| | |||| ||| Sbjct 1714136 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTT--CCGACTAT 1714193 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||||| ||||||||||||||||| |||||||| || Sbjct 1714194 AATATTCAAAAAGAATCTACACTGCATTTAGTTTT 1714228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423027646703200