Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1843 194 1e-44 seq1732 89.7 4e-13 >seq1843 Length=1107702 Score = 194 bits (214), Expect = 1e-44 Identities = 344/498 (69%), Gaps = 8/498 (2%) Strand=Plus/Plus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 |||||||||||||| || || || ||||||||||| ||||| ||||| ||||| || ||| Sbjct 491617 GGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACACCATCGAAGAACTTC 491676 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGTTTCTTTT---TTCAACATTG 84353 || || | || ||||| || ||| || || || ||| || ||| || | Sbjct 491677 CAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTCTTCACTTCGTCA--G 491734 Query 84354 TGCATGAAATAA-AACGGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAG 84412 || | ||| || |||||||| | || |||||||| || | || || | ||||| || Sbjct 491735 TGAA--AAAGAAGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCAAGATCTTCAG 491792 Query 84413 GTGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTT 84472 || || |||| ||| ||||||||| || || || || || || || ||||| Sbjct 491793 GTCTGGTCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGTAAGGCTCGTT 491852 Query 84473 CCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAAT 84532 ||| | |||| ||||| || || ||||| | || ||||| ||||||||||| | | Sbjct 491853 CCAGGATGACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGTGGATAGATAC 491912 Query 84533 TTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCAC 84592 || ||||| | | || ||||| |||| ||||||| || |||||| || ||| | Sbjct 491913 CTTGAAATCTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACTGCCTTCGATCTC 491972 Query 84593 TTTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTG 84652 || | | ||||| || |||| || || || || || |||||||| |||| || || Sbjct 491973 CTTCAAACTGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCATACAGCAGATG 492032 Query 84653 TGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTC 84712 | | ||| || | ||| || ||| ||||| || || | ||| || |||||||| Sbjct 492033 AGTAAGATTGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTAGACACCCCATTC 492092 Query 84713 AACAAAATACGCAGCAAC 84730 |||||| || || |||| Sbjct 492093 AACAAAGTAGGCGCCAAC 492110 >seq1732 Length=1186882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| || || || || ||||| || | || ||| | | Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || ||||||||| | || |||| Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | ||||||||||||||||||||| | |||||| |||| || | ||||| || Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| || || ||| | || | ||| | ||||| || Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGG 785462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | || | |||| ||| | ||||||||||||||||||||| |||| Sbjct 787146 GATAAGGAGGGTATCCCCC-AGACCAGCAGCGTCTTATCTTTGCTGGCAAACAATTAGAG 787204 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| || |||| ||||||||||| || ||||| || |||||| | || | Sbjct 787205 GATGGTCGCACTTTGTCCGACTACAATATTCAAAAAGAATCCACCCTTCATCTTGTGCTC 787264 Query 22047 CGTTTACGAGGAGG 22060 ||| | ||||| || Sbjct 787265 CGTCTGCGAGGTGG 787278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358114342308184