Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 4e-15 >seq25 Length=722039 Score = 91.5 bits (100), Expect = 4e-15 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||| ||| ||||||||||||||||||||||||| | ||||| | Sbjct 562177 ACGACGCGCTCTGCATCCTGCCGCTGAACGTGGTCAACGAGAAGATCTACGTCTTCCTGT 562236 Query 3470 GGTTCTGGTTCTACGTGCTAGCCATCATCA 3499 ||||||||||| | | || | |||| ||| Sbjct 562237 GGTTCTGGTTCGTCATCCTCGGCATCCTCA 562266 Score = 84.2 bits (92), Expect = 5e-13 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||| || || ||||||||||||||||| || || || | || | ||| || || ||| | Sbjct 680477 ATGCACCTTCCACAAATACGGTCCTTCAGGAACCGTGCAGAAGTTCGACGGTCTGTGCGT 680536 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTT 3479 || || |||| | ||||| || ||||||||| | ||||| ||||||||||| Sbjct 680537 GCTGCCATTGAACATCGTCAATGAAAAGATCTACGTGTTCCTGTGGTTCTGGTT 680590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479672946000