Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq890 91.5 1e-13 >seq890 Length=2258411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 || || | ||| |||| ||| | ||| | | || ||||||||||| || ||||||||| Sbjct 27669 CCTGTGATATGTGCAATCATGTGAGTGAGTAAAGAGTAGCTGGCAATATTGAAAGGAACT 27610 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 |||| |||||| ||| | ||| || |||||| | || || | | ||| || | |||| Sbjct 27609 CCCAGACCCATATCTGCGCTCCTTTGGTACAGCAGGCAAGATAATTTACCATCTGATACA 27550 Query 20360 TAAAATTGA-CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 | || ||| || |||| ||||| || || | ||||| || || | ||||| Sbjct 27549 TGGAACTGAGCAAGACAA-TGACATGGAGGCAAAGCCATTTTACTCAGATCTGATGGGTT 27491 Query 20419 CCACGCACACATAATGATTCTTCTATC 20445 ||| ||||| || | ||||||||||| Sbjct 27490 CCATGCACATATCAGCATTCTTCTATC 27464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441359580884640