Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq535 118 8e-22 seq1732 116 3e-21 seq1046 107 1e-18 >seq535 Length=1858795 Score = 118 bits (130), Expect = 8e-22 Identities = 166/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || |||||||||||||| || ||||| |||||||| || || || ||| Sbjct 56746 CCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGGAA 56804 Query 15010 AGAATTCTCGCGTCTTCTAATTG-TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||| || ||| ||| | ||||| | |||||||| ||| Sbjct 56805 AGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGTGG 56864 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||| || ||||| |||||| ||||||| |||| || || || || || Sbjct 56865 AATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTCAAC 56924 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 56925 TTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCATA 56972 Score = 118 bits (130), Expect = 8e-22 Identities = 166/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || |||||||||||||| || ||||| |||||||| || || || ||| Sbjct 1714242 CCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGGAA 1714184 Query 15010 AGAATTCTCGCGTCTTCTAATTG-TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||| || ||| ||| | ||||| | |||||||| ||| Sbjct 1714183 AGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGTGG 1714124 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||| || ||||| |||||| ||||||| |||| || || || || || Sbjct 1714123 AATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTCAAC 1714064 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 1714063 TTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCATA 1714016 >seq1732 Length=1186882 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | || | ||| ||||| || ||||| || ||||| ||||| || Sbjct 785462 CCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATC--TG 785405 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || ||| | ||||| |||||||||||||| | || | |||||| ||||| | Sbjct 785404 ACAAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGG 785345 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| ||||||| |||||| |||| || || || | ||| | Sbjct 785344 GGATACCCTCTTTGTCCTGAATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAA 785285 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || ||||| ||||| |||| |||||| ||||| || |||||| Sbjct 785284 CCTCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCATA 785235 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | || || || | |||||||| || ||||| || ||||| ||||| | Sbjct 785006 CCACCTCGGAGTCGCAATACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAG 784947 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || ||||||||||| |||||| | ||||| ||||| || || ||| Sbjct 784946 AGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGGGGA 784887 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| ||||| || ||| | || ||||| || | || || Sbjct 784886 ATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACT 784827 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||| || ||||| || |||||||| || ||||| |||||| Sbjct 784826 TCAAGGGTAATCGTCTTACCAGTGAGAGTTTTCACGAAAATCTGCATA 784779 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || ||||| || |||||||| ||| Sbjct 786143 CCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAA 786084 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| | ||| ||||||||| | || | |||||| ||||| ||| Sbjct 786083 AGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGGGGA 786024 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | ||||||||||| || ||| ||| || | || |||||||| | || || Sbjct 786023 -TGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACC 785965 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || || |||| || ||||| ||||| |||||| Sbjct 785964 TCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCATA 785917 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | || || || ||||| || ||||| || |||||||| ||| Sbjct 787051 CCACCTCGGAGACGGAGCACCAAGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAC 786992 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| || || ||||||||| | || | |||||| ||||| || Sbjct 786991 AAAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGG 786932 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| |||| || || || | ||| || Sbjct 786931 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATCGTGTCAGAAGGTTCAACC 786872 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || |||||||| || |||| |||||| || || || |||||| Sbjct 786871 TCAAGAGTGATGGTTTTGCCAGTCAAAGTTTTGACGAAGATCTGCATA 786824 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || ||||| || |||||||| || ||||| ||| ||| | | ||||| Sbjct 787491 AAGACCAAGTGCAGGGTGGATTCTTTTTGAATATTGTAGTCGGAAAGAGTGCGTCCGTCT 787432 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || || ||||||||| | || | |||||| ||||| || || ||||||||||| Sbjct 787431 TCCAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 787372 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| || | || |||||||| | || || || | ||||| || Sbjct 787371 TGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACCTCCAGAGTAATAGTC 787312 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || ||||| || || |||||| Sbjct 787311 TTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 787279 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | || | ||| ||||| || |||||||| || ||||| || Sbjct 785689 CCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGAA 785630 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||||||||| ||||| || || | || | |||||| ||||| ||| Sbjct 785629 AGAGTGCGTCCGTCTTCTAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGGGGA 785570 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | ||||||||||| || ||| ||| || | || |||||||| | || || Sbjct 785569 -TGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACC 785511 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || || |||| || ||||| ||||| |||||| Sbjct 785510 TCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCATA 785463 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | || | ||| ||||| || ||||| || |||||||| || Sbjct 785916 CCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAA 785857 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| || || ||||||||| | || | |||||| ||||| ||| Sbjct 785856 AGAGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 785797 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | ||||||||||| || ||| ||| ||| | || |||||||| | || || Sbjct 785796 -TACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATAGTATCCGAAGGCTCAACC 785738 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || || |||| || ||||| || || |||||| Sbjct 785737 TCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCATA 785690 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||| | | || | |||||| || || ||||| || |||||||| || Sbjct 786823 CCTCCTCGCAGACGGAGCACAAGATGAAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAA 786764 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| || ||||| || || | || | |||||| ||||| ||| Sbjct 786763 AGAGTGCGTCCGTCTTCCAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGGGGA 786704 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | ||||||||||| || ||| ||| || | || |||||||| | ||| || Sbjct 786703 -TGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGTTCAACC 786645 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || || |||| || ||||| ||||| |||||| Sbjct 786644 TCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCATA 786597 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | || | ||||||||| || |||||||| || ||||| ||| Sbjct 787278 CCACCTCGCAGACGGAGCACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGGAC 787219 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | || ||||||||||||||||| | || | |||||| ||||| | || Sbjct 787218 AAAGTGCGACCATCCTCTAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTC-TGGGGG 787160 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || ||| ||| || |||| || || || ||| || Sbjct 787159 ATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGATGGTTCAACC 787100 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || || ||||| || || || || |||||| Sbjct 787099 TCCAGAGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCATA 787052 >seq1046 Length=465179 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | || || || ||||| || || ||||| ||||||||||| | Sbjct 190240 CCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAG 190181 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| || ||||| |||||| | || | ||| || ||||| ||| Sbjct 190180 AGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 190121 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| || ||||| || ||||| || ||| |||| || || || ||| || Sbjct 190120 ATTCCCTCTTTGTCCTGGATCTTTGCCTTC-ACATTTTCGATGGTGTCTGAGGCTTCCAC 190062 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||||||||| || || |||||||| || || ||||| Sbjct 190061 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 190014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357381563706860