Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1843 145 5e-30 seq1732 100 2e-16 seq1046 86.0 4e-12 >seq1843 Length=1107702 Score = 145 bits (160), Expect = 5e-30 Identities = 339/506 (67%), Gaps = 9/506 (2%) Strand=Plus/Plus Query 6510 GGGTTGGCACCTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTC 6569 |||||||| |||||||| || || || |||||||| ||||| || || ||||| || ||| Sbjct 491617 GGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACACCATCGAAGAACTTC 491676 Query 6570 CACGTTTCCAAAAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTT 6629 || ||||| | || || || | |||| || | || || | |||| | Sbjct 491677 CAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTCTTCACTTCGTCAGTG 491736 Query 6630 AACTGGTAAAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCT 6689 || | | ||||| || || |||||||| || | || ||||| || | | ||| Sbjct 491737 AAAAAGAAGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCAAGATCTTCAGGTCT 491796 Query 6690 GGATTGTGGC--GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGT 6747 || | | || | || | | ||| || || || ||||| || ||||| || ||||| Sbjct 491797 GG--TCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGTAAGGCTCGTTCC 491854 Query 6748 AGGCCTCGACACCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTT 6807 ||| | ||| || ||||||||||| || || |||| ||| || || | ||| | Sbjct 491855 AGGATGACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGTGGATAGATACCT 491914 Query 6808 TGAAATCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTCAAACGAACTGGGTATT-TGT 6866 ||||||||| | |||| ||| ||| | |||| || | || |||| | | | Sbjct 491915 TGAAATCTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAA---ACTGCCTTCGATCT 491971 Query 6867 TGTTTAAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAA 6926 || || | ||||| | ||||| || ||||| ||||| || || || |||| || | Sbjct 491972 CCTTCAAACTG-TCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCATACAGCAGA 492030 Query 6927 TGTGTAAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCAT 6986 || |||||||| || ||||| | ||| |||| | | || ||| ||||||||| Sbjct 492031 TGAGTAAGATTGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTAGACACCCCAT 492090 Query 6987 TCCACAAAGTAAGCGCCCACAACATT 7012 || |||||||| ||||| ||||| || Sbjct 492091 TCAACAAAGTAGGCGCCAACAACCTT 492116 >seq1732 Length=1186882 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||| || || | ||| | || |||||| || || |||||||| | | Sbjct 785462 CCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCTGAC 785403 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || |||| || | ||||||||| || | ||| Sbjct 785402 AAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGG 785343 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || |||||||| | | |||| | |||| || | | | |||||| | ||| Sbjct 785342 ATACCCTCTTTGTC-CTGAATTTTGGCCTTTACAT--TTTCAATTGTGTCAGAAGGTTCA 785286 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | ||| || || ||||| || |||||||| || || |||||||| Sbjct 785285 ACCTCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCAT 785236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | |||||| || | ||| | ||| ||||||||| || || || || | | Sbjct 784778 CCGCCACGGAGACGCAGAACAAGATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAC 784719 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || ||||| || || || | || || || || |||||||| | || Sbjct 784718 AGTGTGCGGCCGTCTTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGGA 784659 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || ||||| ||||| | | | ||||| | || || Sbjct 784658 ATGCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCGACT 784599 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 784598 TCAAGCGTAATAGTTTTACCCGTCAAGGTTTTTACGAAAATCTGCATG 784551 >seq1046 Length=465179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| || | ||| ||| ||||| || || ||||| | Sbjct 190240 CCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAG 190181 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| ||||| ||||| || | || || | ||| ||||| || | || Sbjct 190180 AGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 190121 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || ||| || | | | | ||||||| | |||||| Sbjct 190120 ATTCCCTCTTTGTCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCTGAGGCTTCCACC 190061 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||||||||| | |||||||||||||||||||| Sbjct 190060 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 190014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347359456373468