Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1835 118 1e-21 seq1057 118 1e-21 seq957 89.7 6e-13 >seq1835 Length=830947 Score = 118 bits (130), Expect = 1e-21 Identities = 878/1401 (63%), Gaps = 39/1401 (3%) Strand=Plus/Minus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| |||||| ||||| | ||||| || | || || || ||||| || ||||||||| Sbjct 534382 GAAAGGCCACAGCACATGCTGATGCGAGTTTCTATTGGCATTCATGGTGAGGATATTGAT 534323 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGG----TATGTTCATCCACGCAACACC 111721 ||| | | |||||| | | |||| || ||| |||| || |||| || Sbjct 534322 GCTGCCATAAATACATACAATTTGCTGTC---TGAAAAATAT-TTCACACATGCAAGCCC 534267 Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781 ||| || ||| |||| ||||| | || ||| | || ||||||||| ||||||| Sbjct 534266 AACTCTATTCTCAGCTGCAACACCTCGTCCTCAATTATCTTCTTGTTTCCTCATTGCAAT 534207 Query 111782 CAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAA 111841 || || || || | || ||||| | || || | ||||||| | || || || Sbjct 534206 GAAAGATGACAGCATTGAAGGGATTTATGATACCCTAAAACAATGTGCTCTCATTTCTAA 534147 Query 111842 GTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAG 111901 | ||||| || || || | || |||| | | ||| | || || ||| Sbjct 534146 ATCAGCTGGAGGGATTGGACTTCATGTCCACTGTATTAGATCTAAGGGTACTTACATTGC 534087 Query 111902 AGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 111961 ||||||||||| |||| ||||| || |||||||| | | || | || ||||| Sbjct 534086 TGGTACAAATGGCGTATCAAATGGTCTTGTTCCAATGTTAAGAGTCTACAATAATACAGC 534027 Query 111962 GCGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGA 112015 |||||||| |||||| || || |||| || || | || | ||| | || Sbjct 534026 TCGCTATGTTGACCAAGGTG---GTAACAAGAGACCTGGTGCTTTTGCTATTTATTTAGA 533970 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 |||||||| || || || | || ||| | || ||| || ||| | || || Sbjct 533969 ACCATGGCATGCTGACATATTCGAATTCTTAGATTTGAAAAAAAATACTGGTAAAGAAGA 533910 Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | ||| | || ||||| | ||| | ||||| || || | |||||||| ||||| Sbjct 533909 AGTGCGAGCAAGAGAACTCTTTTATGCTTTATGGATACCTGACTTATTCATGAAAAGAGT 533850 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TG 112194 || | | || ||| | || | || || | | || || || || || || Sbjct 533849 GGAAACTAATCAAAACTGGAGTATCATGTGCCCCCATGAATGTCCTGGACTATCTGACTG 533790 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG-AAAGTCGGGCGACT 112253 | | ||| || || ||||| || | || || || || ||| ||| | | | Sbjct 533789 CTG-GGGAGAAGAATTTGAGGCTTTGTATGAGAAATATGA--AAGTGAAGGCCGTTTTGT 533733 Query 112254 GCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 | || || |||| | ||||||||||||| | | | || || || || Sbjct 533732 GAAACAAGTCAGAGCTCAAATTTTGTGGAAAGCTATAATTGAAGCACAGGTTGAAACCGG 533673 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 |||||||| ||||| ||||| || | || ||| ||| ||||||||||| |||||||| Sbjct 533672 AACACCATACATGCTCTACAAGGATTCATGCAACAGAAAAAGTAATCAAAAAAATTTGGG 533613 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 || || | ||||| || || ||||| | |||| ||| |||||| Sbjct 533612 CACCATTAAATGCAGTAACCTTTGCACTGAAATTGTTGAATATACTTCATCAGATGAAGT 533553 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC 112492 || || ||||| | |||||||| || | | || ||| || || | || || Sbjct 533552 TGCAGTTTGTAATTTAGCATCAATTGCATTGAATATGTTTGTAAAT---GATAACAAAAC 533496 Query 112493 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | | | | ||| | | |||||||| |||||| | ||| |||| || |||| | | Sbjct 533495 GTACAACTTTATAAAGTTAAAAGAAGTTACTAAAACTATAACACAAAATCTGAACAAAAT 533436 Query 112553 TATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 ||||||| |||| ||||| || ||| ||| ||||| |||||||||||| | | Sbjct 533435 TATTGATGTGAATTACTACCCAGTCCCAGA-GGCTAAAAAATCAAATATGAGACACAGAC 533377 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 | ||||| | || || ||||| | || |||| || | | ||| ||| || Sbjct 533376 CCATTGGAATTGGAGTACAAGGCTTAGCTGATGCCTTTGTATTGATGCGCATACCATATG 533317 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || | || | || | ||| || ||||| || || || ||| | | || | Sbjct 533316 AAAGTGAAGCTGCAATTAAATTAAATCAGCAGATATTCGAAACTATTTATTATGGTGCAC 533257 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | || || |||| || || || ||| |||| || || || | ||| ||| || Sbjct 533256 TAGAAGCAAGTTGTGAATTAGCTGAGAAGTATGGAGTGTACGAGACATATGAAGGTAGTC 533197 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG--GAAGGTGAGACCAAGCTTCACTA 112849 | ||| || || | | || | || |||||| |||||| || | || || Sbjct 533196 CTGCTAGTCAGGGCATATTACAGTACGACATGTGGAACAAGGTG---CCTA-CTGATTTA 533141 Query 112850 -CGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 ||||||| | || || || || ||| | | ||||| | || ||||| Sbjct 533140 TGGACTGGGCATCCCTGAAAGAGAAGATTGCAA--AACATGGTCTCAGAAATTCGCTTTT 533083 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | | || |||||||| || || ||||| || ||||| || || || ||||||| ||||| Sbjct 533082 GTTAGCTCCAATGCCTACTGCTTCCACTGCCCAAATATTAGGAAACAATGAATCTTTTGA 533023 Query 112967 ACCCTACACGACGAACATCTA 112987 ||| | ||| | |||||||| Sbjct 533022 ACCATTCACATCTAACATCTA 533002 >seq1057 Length=1009321 Score = 118 bits (130), Expect = 1e-21 Identities = 878/1401 (63%), Gaps = 39/1401 (3%) Strand=Plus/Plus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| |||||| ||||| | ||||| || | || || || ||||| || ||||||||| Sbjct 686273 GAAAGGCCACAGCACATGCTGATGCGAGTTTCTATTGGCATTCATGGTGAGGATATTGAT 686332 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGG----TATGTTCATCCACGCAACACC 111721 ||| | | |||||| | | |||| || ||| |||| || |||| || Sbjct 686333 GCTGCCATAAATACATACAATTTGCTGTC---TGAAAAATAT-TTCACACATGCAAGCCC 686388 Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781 ||| || ||| |||| ||||| | || ||| | || ||||||||| ||||||| Sbjct 686389 AACTCTATTCTCAGCTGCAACACCTCGTCCTCAATTATCTTCTTGTTTCCTCATTGCAAT 686448 Query 111782 CAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAA 111841 || || || || | || ||||| | || || | ||||||| | || || || Sbjct 686449 GAAAGATGACAGCATTGAAGGGATTTATGATACCCTAAAACAATGTGCTCTCATTTCTAA 686508 Query 111842 GTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAG 111901 | ||||| || || || | || |||| | | ||| | || || ||| Sbjct 686509 ATCAGCTGGAGGGATTGGACTTCATGTCCACTGTATTAGATCTAAGGGTACTTACATTGC 686568 Query 111902 AGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 111961 ||||||||||| |||| ||||| || |||||||| | | || | || ||||| Sbjct 686569 TGGTACAAATGGCGTATCAAATGGTCTTGTTCCAATGTTAAGAGTCTACAATAATACAGC 686628 Query 111962 GCGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGA 112015 |||||||| |||||| || || |||| || || | || | ||| | || Sbjct 686629 TCGCTATGTTGACCAAGGTG---GTAACAAGAGACCTGGTGCTTTTGCTATTTATTTAGA 686685 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 |||||||| || || || | || ||| | || ||| || ||| | || || Sbjct 686686 ACCATGGCATGCTGACATATTCGAATTCTTAGATTTGAAAAAAAATACTGGTAAAGAAGA 686745 Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | ||| | || ||||| | ||| | ||||| || || | |||||||| ||||| Sbjct 686746 AGTGCGAGCAAGAGAACTCTTTTATGCTTTATGGATACCTGACTTATTCATGAAAAGAGT 686805 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TG 112194 || | | || ||| | || | || || | | || || || || || || Sbjct 686806 GGAAACTAATCAAAACTGGAGTATCATGTGCCCCCATGAATGTCCTGGACTATCTGACTG 686865 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG-AAAGTCGGGCGACT 112253 | | ||| || || ||||| || | || || || || ||| ||| | | | Sbjct 686866 CTG-GGGAGAAGAATTTGAGGCTTTGTATGAGAAATATGA--AAGTGAAGGCCGTTTTGT 686922 Query 112254 GCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 | || || |||| | ||||||||||||| | | | || || || || Sbjct 686923 GAAACAAGTCAGAGCTCAAATTTTGTGGAAAGCTATAATTGAAGCACAGGTTGAAACCGG 686982 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 |||||||| ||||| ||||| || | || ||| ||| ||||||||||| |||||||| Sbjct 686983 AACACCATACATGCTCTACAAGGATTCATGCAACAGAAAAAGTAATCAAAAAAATTTGGG 687042 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 || || | ||||| || || ||||| | |||| ||| |||||| Sbjct 687043 CACCATTAAATGCAGTAACCTTTGCACTGAAATTGTTGAATATACTTCATCAGATGAAGT 687102 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC 112492 || || ||||| | |||||||| || | | || ||| || || | || || Sbjct 687103 TGCAGTTTGTAATTTAGCATCAATTGCATTGAATATGTTTGTAAAT---GATAACAAAAC 687159 Query 112493 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | | | | ||| | | |||||||| |||||| | ||| |||| || |||| | | Sbjct 687160 GTACAACTTTATAAAGTTAAAAGAAGTTACTAAAACTATAACACAAAATCTGAACAAAAT 687219 Query 112553 TATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 ||||||| |||| ||||| || ||| ||| ||||| |||||||||||| | | Sbjct 687220 TATTGATGTGAATTACTACCCAGTCCCAGA-GGCTAAAAAATCAAATATGAGACACAGAC 687278 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 | ||||| | || || ||||| | || |||| || | | ||| ||| || Sbjct 687279 CCATTGGAATTGGAGTACAAGGCTTAGCTGATGCCTTTGTATTGATGCGCATACCATATG 687338 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || | || | || | ||| || ||||| || || || ||| | | || | Sbjct 687339 AAAGTGAAGCTGCAATTAAATTAAATCAGCAGATATTCGAAACTATTTATTATGGTGCAC 687398 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | || || |||| || || || ||| |||| || || || | ||| ||| || Sbjct 687399 TAGAAGCAAGTTGTGAATTAGCTGAGAAGTATGGAGTGTACGAGACATATGAAGGTAGTC 687458 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG--GAAGGTGAGACCAAGCTTCACTA 112849 | ||| || || | | || | || |||||| |||||| || | || || Sbjct 687459 CTGCTAGTCAGGGCATATTACAGTACGACATGTGGAACAAGGTG---CCTA-CTGATTTA 687514 Query 112850 -CGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 ||||||| | || || || || ||| | | ||||| | || ||||| Sbjct 687515 TGGACTGGGCATCCCTGAAAGAGAAGATTGCAA--AACATGGTCTCAGAAATTCGCTTTT 687572 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | | || |||||||| || || ||||| || ||||| || || || ||||||| ||||| Sbjct 687573 GTTAGCTCCAATGCCTACTGCTTCCACTGCCCAAATATTAGGAAACAATGAATCTTTTGA 687632 Query 112967 ACCCTACACGACGAACATCTA 112987 ||| | ||| | |||||||| Sbjct 687633 ACCATTCACATCTAACATCTA 687653 >seq957 Length=442878 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080 ||||| || || ||| || ||||| |||||||| | |||||| || |||||||||||| Sbjct 164867 TCCTTGCCGCCGCAGAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAGATTGATATTG 164926 Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACC 176139 ||||| |||| ||||| | |||||| || || || || ||| ||||| |||||| Sbjct 164927 TTTGACCCCACGTAGTTTTGCGCCAAATTCACTATAGTCATCGCTAGAGACTGTTCACC 164985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620723808765120