Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1835 100 3e-16 seq1057 100 3e-16 seq629 82.4 9e-11 >seq1835 Length=830947 Score = 100 bits (110), Expect = 3e-16 Identities = 247/372 (66%), Gaps = 2/372 (1%) Strand=Plus/Plus Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| ||||||||| ||||| |||| |||| || | ||| |||| || |||| ||| Sbjct 534012 TGGTCAACATAGCGAGCTGTATTATTGTAGACTCTTAACATTGGAACAAGACCATTTGAT 534071 Query 110830 TGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACC 110888 ||||||||||| ||| | | || || | | ||| ||||| ||| | || Sbjct 534072 ACGCCATTTGTACCAGCAATGTAAGTACCC-TTAGATCTAATACAGTGGACATGAAGTCC 534130 Query 110889 AATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATC 110948 ||| || || || | ||| ||| | ||||| | | | || ||| ||||||| || || Sbjct 534131 AATCCCTCCAGCTGATTTAGAAATGAGAGCACATTGTTTTAGGGTATCATAAATCCCTTC 534190 Query 110949 AATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 ||| || | || | ||||| || || |||||||| | ||||||||||| ||| | Sbjct 534191 AATGCTGTCATCTTTCATTGCAATGAGGAAACAAGAAGATAATTGAGGACGAGGTGTTGC 534250 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGT 111068 || ||| || || || | ||||| |||| || |||| | |||||||| Sbjct 534251 AGCTGAGAATAGAGTTGGGCTTGCATGTGTGAAATATTTTTCAGACAGCAAATTGTATGT 534310 Query 111069 GTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATA 111128 | | || | | ||| | ||| ||||| ||||| | ||||||||| | ||| | Sbjct 534311 ATTTATGGCAGCATCAATATCCTCACCATGAATGCCAATAGAAACTCGCATCAGCATGTG 534370 Query 111129 TTGAGGCGTTTC 111140 || ||| |||| Sbjct 534371 CTGTGGCCTTTC 534382 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810 |||||||||||| ||| | ||||| ||| | |||||||| |||| ||||| ||||||| Sbjct 533000 GGTAGATGTTAGATGTGAATGGTTCAAAAGATTCATTGTTTCCTAATATTTGGGCAGTGG 533059 Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 |||| || ||||| ||||| | | ||| |||| |||||| Sbjct 533060 AAGCAGTAGGCATTGGAGCTAACAAAAGCGAATTTCTGAGACC 533102 >seq1057 Length=1009321 Score = 100 bits (110), Expect = 3e-16 Identities = 247/372 (66%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| ||||||||| ||||| |||| |||| || | ||| |||| || |||| ||| Sbjct 686643 TGGTCAACATAGCGAGCTGTATTATTGTAGACTCTTAACATTGGAACAAGACCATTTGAT 686584 Query 110830 TGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACC 110888 ||||||||||| ||| | | || || | | ||| ||||| ||| | || Sbjct 686583 ACGCCATTTGTACCAGCAATGTAAGTACCC-TTAGATCTAATACAGTGGACATGAAGTCC 686525 Query 110889 AATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATC 110948 ||| || || || | ||| ||| | ||||| | | | || ||| ||||||| || || Sbjct 686524 AATCCCTCCAGCTGATTTAGAAATGAGAGCACATTGTTTTAGGGTATCATAAATCCCTTC 686465 Query 110949 AATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 ||| || | || | ||||| || || |||||||| | ||||||||||| ||| | Sbjct 686464 AATGCTGTCATCTTTCATTGCAATGAGGAAACAAGAAGATAATTGAGGACGAGGTGTTGC 686405 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGT 111068 || ||| || || || | ||||| |||| || |||| | |||||||| Sbjct 686404 AGCTGAGAATAGAGTTGGGCTTGCATGTGTGAAATATTTTTCAGACAGCAAATTGTATGT 686345 Query 111069 GTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATA 111128 | | || | | ||| | ||| ||||| ||||| | ||||||||| | ||| | Sbjct 686344 ATTTATGGCAGCATCAATATCCTCACCATGAATGCCAATAGAAACTCGCATCAGCATGTG 686285 Query 111129 TTGAGGCGTTTC 111140 || ||| |||| Sbjct 686284 CTGTGGCCTTTC 686273 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810 |||||||||||| ||| | ||||| ||| | |||||||| |||| ||||| ||||||| Sbjct 687655 GGTAGATGTTAGATGTGAATGGTTCAAAAGATTCATTGTTTCCTAATATTTGGGCAGTGG 687596 Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 |||| || ||||| ||||| | | ||| |||| |||||| Sbjct 687595 AAGCAGTAGGCATTGGAGCTAACAAAAGCGAATTTCTGAGACC 687553 >seq629 Length=31406 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136704 CGCACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGG 136763 |||| || | | ||||||||||||||||||||| ||||| ||||||| |||||| |||| Sbjct 30105 CGCATCGGCCCTTTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGG 30046 Query 136764 TTCGAGCCCC 136773 ||||| |||| Sbjct 30045 TTCGATCCCC 30036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588958360168800