Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1835 118 1e-21 seq1057 118 1e-21 seq1180 109 6e-19 >seq1835 Length=830947 Score = 118 bits (130), Expect = 1e-21 Identities = 473/724 (65%), Gaps = 28/724 (4%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||| | |||||||| ||||||| || || || ||||| || ||||| Sbjct 533002 TAGATGTTAGATGTGAATGGTTCAAAAGATTCATTGTTTCCTAATATTTGGGCAGTGGAA 533061 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTT 106052 || || |||||||| || | |||||| || | ||||| | || ||| || | Sbjct 533062 GCAGTAGGCATTGGAGCTAACAAAAGCGAATTTCTGAGACCATGTT--TTGCAATCTTCT 533119 Query 106053 CCTTGAGAACATCCCAGTCG-TAGTTGAGCTTGGTTTCACCTTC--CCACATATCAAATT 106109 | || || ||||||| || | || | || |||||| |||||| || | | Sbjct 533120 CTTTCAGGGATGCCCAGTCCATAAATCAG-TAGG---CACCTTGTTCCACATGTCGTACT 533175 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 | | | || || | ||| ||| ||| ||||||| || || | |||| Sbjct 533176 GTAATATGCCCTGACTAGCAGGACTACCTTCATATGTCTCGTACACTCCATACTTCTCAG 533235 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 | |||||||| || || || || | | | ||| || ||||| || || | ||| | Sbjct 533236 CTAATTCACAACTTGCTTCTAGTGCACCATAATAAATAGTTTCGAATATCTGCTGATTTA 533295 Query 106230 -TCTCCTTG--GCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCG 106285 | | ||| |||||| | ||| ||| ||| ||| ||| | ||| |||| || Sbjct 533296 ATTTAATTGCAGCTTCACTT---TCATATG-GTATGCGCATCAATACAAAGGCATCAGCT 533351 Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345 | ||||| || || | ||||| |||||||||| |||||| || ||| || ||| Sbjct 533352 AAGCCTTGTACTCCAATTCCAATGGGTCTGTGTCTCATATTTGATTTTTTAGCC-TCTGG 533410 Query 106346 -ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 || || || |||| ||||| | | ||| ||||||| || | | | || || | Sbjct 533411 GACTGGGTAGTAATTCACATCAATAATTTTGTTCAGATTTTGTGTTATAGTTTTAGTAAC 533470 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT-TCATTGACATACTTTGGAAGGG 106463 ||| | | ||| |||| | || || | | ||||| ||| || | | | Sbjct 533471 TTCTTTTAACTTT--ATAA--AGTTGTACGTTTTGTTATCATTTACAAACATATTCAATG 533526 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCT 106522 | |||||||| ||||| ||||| || ||||| | || || || || | |||||| Sbjct 533527 CAATTGATGCTAAATTACAAACTGCAACTTCATC-TGATGAAGTATATTCAACAATTTCA 533585 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || || | ||| | ||||| || |||||||| ||||| ||||| ||| ||||||| Sbjct 533586 GTGCAAAGGTTACTGCATTTAATGGTGCCCAAATTTTTTTGATTACTTTTTCTGTTGCAT 533645 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 | |||||||||||||||||| || || || || || ||||| | | || || ||| Sbjct 533646 GAATCCTTGTAGAGCATGTATGGTGTTCCGGTTTCAACCTGTGCTTCAATTATAGCTTTC 533705 Query 106643 CACA 106646 |||| Sbjct 533706 CACA 533709 >seq1057 Length=1009321 Score = 118 bits (130), Expect = 1e-21 Identities = 473/724 (65%), Gaps = 28/724 (4%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||| | |||||||| ||||||| || || || ||||| || ||||| Sbjct 687653 TAGATGTTAGATGTGAATGGTTCAAAAGATTCATTGTTTCCTAATATTTGGGCAGTGGAA 687594 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTT 106052 || || |||||||| || | |||||| || | ||||| | || ||| || | Sbjct 687593 GCAGTAGGCATTGGAGCTAACAAAAGCGAATTTCTGAGACCATGTT--TTGCAATCTTCT 687536 Query 106053 CCTTGAGAACATCCCAGTCG-TAGTTGAGCTTGGTTTCACCTTC--CCACATATCAAATT 106109 | || || ||||||| || | || | || |||||| |||||| || | | Sbjct 687535 CTTTCAGGGATGCCCAGTCCATAAATCAG-TAGG---CACCTTGTTCCACATGTCGTACT 687480 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 | | | || || | ||| ||| ||| ||||||| || || | |||| Sbjct 687479 GTAATATGCCCTGACTAGCAGGACTACCTTCATATGTCTCGTACACTCCATACTTCTCAG 687420 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 | |||||||| || || || || | | | ||| || ||||| || || | ||| | Sbjct 687419 CTAATTCACAACTTGCTTCTAGTGCACCATAATAAATAGTTTCGAATATCTGCTGATTTA 687360 Query 106230 -TCTCCTTG--GCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCG 106285 | | ||| |||||| | ||| ||| ||| ||| ||| | ||| |||| || Sbjct 687359 ATTTAATTGCAGCTTCACTT---TCATATG-GTATGCGCATCAATACAAAGGCATCAGCT 687304 Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345 | ||||| || || | ||||| |||||||||| |||||| || ||| || ||| Sbjct 687303 AAGCCTTGTACTCCAATTCCAATGGGTCTGTGTCTCATATTTGATTTTTTAGCC-TCTGG 687245 Query 106346 -ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 || || || |||| ||||| | | ||| ||||||| || | | | || || | Sbjct 687244 GACTGGGTAGTAATTCACATCAATAATTTTGTTCAGATTTTGTGTTATAGTTTTAGTAAC 687185 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT-TCATTGACATACTTTGGAAGGG 106463 ||| | | ||| |||| | || || | | ||||| ||| || | | | Sbjct 687184 TTCTTTTAACTTT--ATAA--AGTTGTACGTTTTGTTATCATTTACAAACATATTCAATG 687129 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCT 106522 | |||||||| ||||| ||||| || ||||| | || || || || | |||||| Sbjct 687128 CAATTGATGCTAAATTACAAACTGCAACTTCATC-TGATGAAGTATATTCAACAATTTCA 687070 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || || | ||| | ||||| || |||||||| ||||| ||||| ||| ||||||| Sbjct 687069 GTGCAAAGGTTACTGCATTTAATGGTGCCCAAATTTTTTTGATTACTTTTTCTGTTGCAT 687010 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 | |||||||||||||||||| || || || || || ||||| | | || || ||| Sbjct 687009 GAATCCTTGTAGAGCATGTATGGTGTTCCGGTTTCAACCTGTGCTTCAATTATAGCTTTC 686950 Query 106643 CACA 106646 |||| Sbjct 686949 CACA 686946 >seq1180 Length=1058544 Score = 109 bits (120), Expect = 6e-19 Identities = 274/413 (66%), Gaps = 25/413 (6%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| | ||| || | ||| || || | ||| |||||||| || | ||||| || || Sbjct 7800 TCAAATCTACCAGGTCTAAGCAGAGCTTTATCCAGGATATCGACTCTGTTCGTAGCAGCC 7741 Query 9255 AT---GACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | ||||||| || |||| |||| ||||||||||| || ||| |||||||| Sbjct 7740 AGTACGACAACATTAGTTGTTGTATTA---AAACCATCCATTTCCACCAACAGTTGGTTC 7684 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTG----CTTT-- 9365 | ||| | ||| |||| || | ||| ||| |||||| |||| Sbjct 7683 AAAGTATTCTCCTGTTC------CGAGTG---ACCTCCAAAGCTGCGTCCTCCTCTTTTC 7633 Query 9366 ---CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422 ||||| |||||||| ||||||||||| | ||| || ||| || || || || ||| Sbjct 7632 CTACCCACAGCATCAATTTCATCAATGAA-AGAATGCAAGGTGCATGTTTACGAGCCATT 7574 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482 |||| | ||| || ||||| | || || || |||||||| |||| || | | Sbjct 7573 GCAAACATATCACGGACCCTGGAAGGTCCAACGCCCACAAACATTTCCAAGAACTCGGAT 7514 Query 9483 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 | || | |||||| || ||||||| || || ||| | || || || | ||| Sbjct 7513 CCTGAGACTGTGATGAAAGGCACATTAGCCTCTCCTGCAGTAGCCTTAGCTAGCAAGGTC 7454 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| ||||| || || | ||| ||||||||| ||||| || ||||| Sbjct 7453 TTACCAGTACCAGGAGGTCCAGTGAGTAGGGCACCCTTAGGAATTTTAGCGCC 7401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589963130075040