Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1843 242 3e-59 seq1732 165 6e-36 seq535 165 6e-36 >seq1843 Length=1107702 Score = 242 bits (268), Expect = 3e-59 Identities = 762/1168 (65%), Gaps = 23/1168 (2%) Strand=Plus/Plus Query 42276 TCGCCGTTGTCAGCGTCAATCTCCCAAGCAAACAATCCGCCTAAATCATTTTCGATCACA 42335 || || ||||| || || | |||||||||||||| || ||||| | ||| | ||||| Sbjct 490948 TCACCATTGTCCGCATCCACCTCCCAAGCAAACAGCCCACCTAACTTATTGTTCCTCACA 491007 Query 42336 TATTGCGCTTTGTCCAACACCGATTCGGCGCTGTCATAACTAATCAAATTCCCCGTATC- 42394 |||| || || || | |||| ||| ||||| |||| | | ||| || || Sbjct 491008 TATTTGGCCTTCTCAATGGTCGATCTCGCGTCATCATACGTAATAAGGTCCCCAGTCTCC 491067 Query 42395 TTGTTGAAAGACATACGCGGCTTTTGCCGTTTTATCATATGTGTATTCGTAAT--CTTTT 42452 || |||| || || | || | ||| || ||||| ||| || | | | | Sbjct 491068 TTCCTGAAC-ACGTATGGTGCCTGAGCCACCTTGTCATAGTGGTACTCCCATTTGCCCTG 491126 Query 42453 AG--ATTATTTTT--AATCTGTCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAAC 42508 || ||| || ||||| || ||||| || || ||||| | |||||| || ||| Sbjct 491127 AGCAATTTCGTTGGCAATCTCCCTGTAGTCCACCACACCATCCTGCCAAGTTCCTTTAAC 491186 Query 42509 TGGACCTGTCGCAATACCCGTGAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCA 42568 ||||| ||||| | ||| ||||| ||||| | || |||| | | ||||| ||||| Sbjct 491187 GGGACCAGTCGCTACACCAGTGAACGGATTGCCATCTTTGTAACCGTTGACTCCAGTCCA 491246 Query 42569 ACCTCGTCCGTACATGGCCACGCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAA 42628 |||||||| ||||| || || || | | || || | || | || ||| ||| Sbjct 491247 GCCTCGTCCATACATAGCAACACCAACGACAATCTTCTTGGGGCTAACACCTTGAGCCAA 491306 Query 42629 AAGCGTTTGAACGGCATAATCTGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATA 42688 || || || | | || | |||||| || || ||||||| | || || || Sbjct 491307 CAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCTTGGGGTTCCATGCTGGGGCGTA 491366 Query 42689 CAGATTTGTTTGATGGCCCAAATCTGAATTT-GACCAAGCACCTTTAAAGTCATAGCTCA 42747 || | || || ||||| || | || || |||||||| || || |||||||| |||| Sbjct 491367 CAAACCTGCCTGGTGGCC-AAGTGTGTCGTTAGACCAAGCGCCCTTGAAGTCATAACTCA 491425 Query 42748 TTAAAAATATTTTATCCAAATAGTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGT 42807 | || || || | ||||| || | ||||| || ||||| || |||| ||| |||| Sbjct 491426 TCAAGAAGATGTGATCCATGTACTGCTGAGCTTCTTTGTAGTCCACAACCTGGATCTTGT 491485 Query 42808 CGTCTCCCGCACTAATTGCGCTAGTCAATTCGTATTTGCGATTAGTTTCGTTTTCTAGTT 42867 | || | || || || |||||||||||| || | ||| | | || | Sbjct 491486 CCCAACCGGAGCTGATAGCAGAAGTCAATTCGTACTTCTTACCAGTCTTGGCAGAAAGCT 491545 Query 42868 CGTCCAGCATGTCGCGCAATTCTCGTAACAAAACTACATACGTAAGACCGTCATTTTGAG 42927 ||| || ||| | | | ||| | || ||| || | ||||||| || || Sbjct 491546 CGTTCAACATCTGTCTGAGTTCCTTCATCAGCTGTACGTAGATGTGACCGTC---TTCAG 491602 Query 42928 GATCTCCAATTGTCGGATTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGC 42987 | | || | || || |||||||||||||| || |||||||||||||| || || | Sbjct 491603 GGGCACCGAGATCAGGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACAC 491662 Query 42988 CGTCAAAAAATTTCCAAGTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCT 43047 | || || || ||||| || | || || |||||| | || || | | || Sbjct 491663 CATCGAAGAACTTCCAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTCT 491722 Query 43048 TGTTTGCATCGCTGAAAAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTA 43107 | | | || ||||||| | |||||||| | || ||||||||||| | ||||| | Sbjct 491723 TCACTTCGTCAGTGAAAAAGAAGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCA 491782 Query 43108 ACACTTTAAGATGAGGGTTAGCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGT 43167 | | || || | || | |||| ||| ||| ||||| || ||||| || |||| Sbjct 491783 AGATCTTCAGGTCTGGTCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGT 491842 Query 43168 ACGGTTCATTCCACGAGGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGT 43227 | || || ||||| || || | ||| || |||||||| || | || ||||| ||||||| Sbjct 491843 AAGGCTCGTTCCAGGATGACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGT 491902 Query 43228 GTATGGAAACTTTGAAGTCGCTTCGACCCGC-ACAAGATTTTTGAAGAGCTTCAAAACTG 43286 | || || || ||||| || | | |||| || ||| | || ||||||| |||||| Sbjct 491903 GGATAGATACCTTGAAATC-TTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACTG 491961 Query 43287 CCAGGAATAGATTTTAAACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCG 43346 || || || |||||||| || ||||| || || || || || || || || || Sbjct 491962 CCTTCGATCTCCTTCAAACTGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCA 492021 Query 43347 TACAACAAATGAGACAAATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACC---- 43402 |||| || ||||| | |||||| | ||||| || || || |||| || Sbjct 492022 TACAGCAGATGAGTAAGATTGGGGATGGGCACACGGTCAACGGG----GAACTTCCTTGG 492077 Query 43403 GTATACGCCCCATTCTACAAAATAAGCG 43430 ||| || |||||||| ||||| || ||| Sbjct 492078 GTAGACACCCCATTCAACAAAGTAGGCG 492105 >seq1732 Length=1186882 Score = 165 bits (182), Expect = 6e-36 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||| ||||| ||||||||||| || ||||| || | | || | | | Sbjct 784767 ACGCAGAACAAGATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAGTGTGCGGCC 784708 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| ||||| ||||| || ||||| || || ||||| || |||||||||||||| Sbjct 784707 GTCTTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCTTT 784648 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| ||| ||| |||| | ||||| || | || |||||||| || | Sbjct 784647 ATCTTGAATTTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCGACTTCAAGCGTAAT 784588 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| || || || |||||||| || ||||||||||| Sbjct 784587 AGTTTTACCCGTCAAGGTTTTTACGAAAATCTGCATGGT 784549 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || | ||| || || |||||||| || || ||||| || | Sbjct 785234 CCACCTCGCAGACGGAGCACAAGATGTAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAA 785175 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||| ||||| || ||||| || | |||||| || || || ||| Sbjct 785174 AGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGA 785115 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || || |||||| |||| | |||||||| | ||| ||| Sbjct 785114 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACT 785055 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| |||||||| || | ||| || |||||||||||||| Sbjct 785054 TCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCAT 785008 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || | ||| ||||| |||||||| || || || ||||| | Sbjct 785462 CCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCTGAC 785403 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | |||| |||||||| || || ||||| || | |||||| || || || || Sbjct 785402 AAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGG 785343 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| || |||||||| |||||| |||| | |||||||| | ||| || Sbjct 785342 ATACCCTCTTTGTCCTGAATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAACC 785283 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || |||||||| |||||||||||||| Sbjct 785282 TCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCAT 785236 Score = 127 bits (140), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || | ||||||||| ||||||||||| |||||||| |||| Sbjct 787278 CCACCTCGCAGACGGAGCACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGGAC 787219 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| || || ||||| || | |||||| || || || || Sbjct 787218 AAAGTGCGACCATCCTCTAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGG-GGG 787160 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || |||||||| || || ||| || |||| | |||||||| | ||| || Sbjct 787159 ATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGATGGTTCAACC 787100 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || | ||| || || || |||||||| Sbjct 787099 TCCAGAGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 787053 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || ||||| ||||||||||| |||||||| |||| | ||| | | Sbjct 787495 ACGCAAGACCAAGTGCAGGGTGGATTCTTTTTGAATATTGTAGTCGGAAAGAGTGCGTCC 787436 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| ||||| || || || || | |||||| || || || || |||||||| || Sbjct 787435 GTCTTCCAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTT 787376 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || ||| || | || | ||| || || | || || || ||||| | Sbjct 787375 GTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACCTCCAGAGTAAT 787316 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || || ||||| || |||||||| Sbjct 787315 AGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 787280 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || | ||| ||||| ||||||||||| |||||||| || | Sbjct 785689 CCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGAA 785630 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || || || || || || ||||| || | |||||| || || || || Sbjct 785629 AGAGTGCGTCCGTCTTCTAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGG-GGG 785571 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || ||| || | || | ||| || || | || || Sbjct 785570 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACC 785511 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || ||||| || || || ||||| || |||||||| Sbjct 785510 TCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785464 >seq535 Length=1858795 Score = 165 bits (182), Expect = 6e-36 Identities = 177/230 (77%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||||||| | |||||||||||| || |||||||||||||| ||||| || |||| Sbjct 56744 TTCCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGG 56802 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTA-CCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || | | |||| |||| |||||| ||||| || ||||| | ||||| || || Sbjct 56803 AAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGT 56862 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| || ||||| |||||||||||| ||||||| |||| | ||||| || | || Sbjct 56863 GGAATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTCA 56922 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| | ||||| || || || ||||| ||||| || ||||| Sbjct 56923 ACTTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCAT 56971 Score = 165 bits (182), Expect = 6e-36 Identities = 177/230 (77%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||||||| | |||||||||||| || |||||||||||||| ||||| || |||| Sbjct 1714244 TTCCACCTCTTAA-CTTAAAACTAAATGCAGTGTAGATTCTTTTTGAATATTATAGTCGG 1714186 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTA-CCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || | | |||| |||| |||||| ||||| || ||||| | ||||| || || Sbjct 1714185 AAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGGTCAGGT 1714126 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| || ||||| |||||||||||| ||||||| |||| | ||||| || | || Sbjct 1714125 GGAATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGATGGCTCA 1714066 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| | ||||| || || || ||||| ||||| || ||||| Sbjct 1714065 ACTTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCAT 1714017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396266828175372