Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1843 168 6e-37 seq1732 118 9e-22 seq1046 114 1e-20 seq535 102 7e-17 >seq1843 Length=1107702 Score = 168 bits (186), Expect = 6e-37 Identities = 335/496 (68%), Gaps = 0/496 (0%) Strand=Plus/Plus Query 106503 AGGATTGGCCCCTTTGCCGCCTGGAAATTCCCAATCTATATCGACGCCATCAAAAAATTT 106562 ||| ||||| ||||| || || || ||||||||||| || || || ||||| || || || Sbjct 491616 AGGGTTGGCTCCTTTACCACCAGGGAATTCCCAATCAATGTCAACACCATCGAAGAACTT 491675 Query 106563 CCAAACTTGCAAAAATTCCTTTACAGAATTTACAAACACGTTTCTTTTTTCAACGTCATG 106622 ||| || | || ||||| || ||| || || || ||| || | ||||| Sbjct 491676 CCAGGTTTCGAGGAAGTCCTTGACTGAAGCAACGAAGCGGTGTCTCTTCACTTCGTCAGT 491735 Query 106623 CATAAAATAGAAGGGGTCTGATAGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATG 106682 | ||| |||| ||||| | || ||||| || || | ||| || | | || | | Sbjct 491736 GAAAAAGAAGAACGGGTCAGCCAGGGTCCATCCACCAACAGAAGGCAAGATCTTCAGGTC 491795 Query 106683 CGGATTTGCCAATTTAGCCGCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCA 106742 || | || ||| | |||||| || || |||||||||||||||||||||||||| Sbjct 491796 TGGTCTCGCTTGTTTCAACATCATCAATTGGCCGAAGTTACCCTTGTAAGGCTCGTTCCA 491855 Query 106743 AGCGGACACGCCTTTTTGCGGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTT 106802 | |||| || || || || || || | |||||||| |||||||| ||||| || || Sbjct 491856 GGATGACAAACCCTTCTGTGGTTTTTGGAGTGCAGCCCAAGGATCGTGGATAGATACCTT 491915 Query 106803 AAAATCGGCGCGCCCTTTGCATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTT 106862 ||||| | | || |||||||| | |||| || || ||||| || || || Sbjct 491916 GAAATCTTCCCTGCCGCTGCATGATCTCTGCAGAGCTTGGAAACTGCCTTCGATCTCCTT 491975 Query 106863 TAAGGCATCGTTTATTCCATCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGA 106922 || ||||| || ||||| || || ||||| || || ||||| |||| | ||| | Sbjct 491976 CAAACTGTCGTTGATGCCATCTCCTCCACAGATTGGGATGAAACCATACAGCAGATGAGT 492035 Query 106923 TAAATTGGGCAGCGGGACTTTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGAC 106982 | |||||| | || || || ||||| || || | || || |||||||| || Sbjct 492036 AAGATTGGGGATGGGCACACGGTCAACGGGGAACTTCCTTGGGTAGACACCCCATTCAAC 492095 Query 106983 AAAATACGCGGCGACA 106998 ||| || ||| | ||| Sbjct 492096 AAAGTAGGCGCCAACA 492111 >seq1732 Length=1186882 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| || || ||||| ||||| || ||| |||||||| Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| ||||||||||| | ||| || || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| |||||||||||||||||| |||| || | ||||||||| Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || |||||||| || || || Sbjct 785416 ATCCAGAAAGAATCAACCCTCCA 785438 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| | || ||||| || |||||| ||| || |||||| Sbjct 784780 ATGCAGATTTTCGTGAAAACTCTCACTGGTAAGACGATTACCCTTGAAGTTGAGCCTTCA 784839 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||||||||| | ||| |||||| Sbjct 784840 GACACTATCGAGAATGTTAAGGCTAAAATCCAAGACAAAGAGGGTATTCCCCCAGATCAG 784899 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| || | ||||| || || |||||||| || ||| | || | | ||||||||| Sbjct 784900 CAGCGATTGATCTTCGCTGGTAAACAATTAGAGGATGGTCGCACCCTCTCAGATTATAAC 784959 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||| || || ||| | ||||| || | ||||| || || Sbjct 784960 ATTCAGAAAGAATCGACCCTTCACCTTGTATTGCGACTCCGAGGTGGTAT 785009 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || | || || |||||||| || |||| |||||||| Sbjct 785008 ATGCAGATATTTGTCAAGACTCTTACTGGCAAAACCATCACTCTCGAAGTTGAACCTTCT 785067 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| |||||||| || | || ||| || Sbjct 785068 GACACAATTGAAAATGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 785127 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| ||||| || ||||||||| ||| | | || || ||| Sbjct 785128 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACTCTTTCTGACTACAAC 785187 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || |||||||| || || || Sbjct 785188 ATCCAGAAAGAATCCACACTACA 785210 >seq1046 Length=465179 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || |||||||| | |||||||||||||| ||| ||| |||| | || Sbjct 190013 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTGGAAGCCTC 190072 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||| ||| |||||||||||| | || ||| || Sbjct 190073 AGACACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCA 190132 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | |||||||| || || ||||| ||||||||| ||| | | ||||| || Sbjct 190133 GCAACGTCTTATCTTCGCTGGTAAACAGTTGGAAGATGGCCGTACTCTCTCTGATTACAA 190192 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||| ||||| || || ||| |||| | || || ||||||| Sbjct 190193 CATCCAAAAGGAATCCACCCTCCACTTGGTGCTCAGGTTGAGAGGAGG 190240 >seq535 Length=1858795 Score = 102 bits (112), Expect = 7e-17 Identities = 168/234 (72%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || || ||||| || || ||| || || ||| Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGG-AAAACAATAACTTTAGAAGTTGAGCCATCA 56913 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || |||||||||||| | || || || Sbjct 56912 GACACCATCGAAAATGTAAAAGCAAAAATTCAA-GACAAAGAGGGAATTCCACCTGACCA 56854 Query 28673 ACAGAGACTTATCTTTGCGGGCAAA-CAATTGGAAGATT--CTAAAACTATGGCCGATTA 28729 ||| ||| | ||||| || ||| || ||| |||||||| | | ||| | |||| || Sbjct 56853 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTT--CCGACTA 56796 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||||||||||||||||| ||||| | || ||||| ||| |||| || || Sbjct 56795 TAATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAAT 56743 Score = 102 bits (112), Expect = 7e-17 Identities = 168/234 (72%), Gaps = 9/234 (4%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || || ||||| || || ||| || || ||| Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGG-AAAACAATAACTTTAGAAGTTGAGCCATCA 1714075 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || |||||||||||| | || || || Sbjct 1714076 GACACCATCGAAAATGTAAAAGCAAAAATTCAA-GACAAAGAGGGAATTCCACCTGACCA 1714134 Query 28673 ACAGAGACTTATCTTTGCGGGCAAA-CAATTGGAAGATT--CTAAAACTATGGCCGATTA 28729 ||| ||| | ||||| || ||| || ||| |||||||| | | ||| | |||| || Sbjct 1714135 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTT--CCGACTA 1714192 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||||||||||||||||| ||||| | || ||||| ||| |||| || || Sbjct 1714193 TAATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAAT 1714245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || ||||| ||||| || ||| ||||||||| Sbjct 57200 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAGACCATCACACTCGAGGTCGAACCTTCA 57141 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || |||| || |||||||||||| | || || || Sbjct 57140 GACACAATCGAAAATGTCAAAGCCAAAATTCAG-GACAAAGAGGGAATCCCACCTGACCA 57082 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 || |||| ||||| || || || || |||||||| | | ||| | |||| || Sbjct 57081 GCAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCT--CCGACTAC 57024 Query 28731 AACATTCAAAAAGAATCTACTCTGCA 28756 |||||||| || |||||||| ||||| Sbjct 57023 AACATTCAGAAGGAATCTACACTGCA 56998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || ||||| ||||| || ||| ||||||||| Sbjct 1713788 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAGACCATCACACTCGAGGTCGAACCTTCA 1713847 Query 28614 GAGACGGTGGCCGATCTC-AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || || |||| |||| || |||||||||||| | || || || Sbjct 1713848 GACACAATCGAAAATGTCAAAGCCAAAATTC-AGGACAAAGAGGGAATCCCACCTGACCA 1713906 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 || |||| ||||| || || || || |||||||| | | ||| | |||| || Sbjct 1713907 GCAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCT--CCGACTAC 1713964 Query 28731 AACATTCAAAAAGAATCTACTCTGCA 28756 |||||||| || |||||||| ||||| Sbjct 1713965 AACATTCAGAAGGAATCTACACTGCA 1713990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425392377648084