Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1835 206 1e-48 seq1057 206 1e-48 >seq1835 Length=830947 Score = 206 bits (228), Expect = 1e-48 Identities = 287/402 (71%), Gaps = 0/402 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | ||| ||||| || || ||||| | |||||||| | ||||| |||| | Sbjct 533847 TCCACTCTTTTCATGAATAAGTCAGGTATCCATAAAGCATAAAAGAGTTCTCTTGCTCGC 533906 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | ||||||||| || ||| ||||| | ||||||||| || || || || | |||||| Sbjct 533907 ACTTCTTCTTTACCAGTATTTTTTTTCAAATCTAAGAATTCGAATATGTCAGCATGCCAT 533966 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 ||||||||||| ||||||||| ||| ||| || |||||||| || || || | Sbjct 533967 GGTTCTAAATAAATAGCAAAAGCACCAGGTCTCTTGTTACCACCTTGGTCAACATAGCGA 534026 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 || || | |||| | ||| | ||||||||||| | ||| |||| | || ||||| | | Sbjct 534027 GCTGTATTATTGTAGACTCTTAACATTGGAACAAGACCATTTGATACGCCATTTGTACCA 534086 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| | | || | ||||||||| ||| |||||| || || || ||||| || Sbjct 534087 GCAATGTAAGTACCCTTAGATCTAATACAGTGGACATGAAGTCCAATCCCTCCAGCTGAT 534146 Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 || ||||| ||||| | | | ||||| |||| |||| ||||| ||| ||||| Sbjct 534147 TTAGAAATGAGAGCACATTGTTTTAGGGTATCATAAATCCCTTCAATGCTGTCATCTTTC 534206 Query 26282 ATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTT 26323 ||| | | | ||||||||||||||||| | | ||| |||| Sbjct 534207 ATTGCAATGAGGAAACAAGAAGATAATTGAGGACGAGGTGTT 534248 Score = 129 bits (142), Expect = 3e-25 Identities = 326/484 (67%), Gaps = 20/484 (4%) Strand=Plus/Plus Query 24684 CTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAA 24743 |||| ||||| ||||| | || ||||| |||||||||||| | | |||||| | |||| Sbjct 532643 CTGCCGGTTTGGTTCTCAAGTAGTACATACCAGTTTTCAATCCCATTTTCCAAGCATAAA 532702 Query 24744 AATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAG----TTCATCGAT 24799 |||| || ||||||| ||| | |||| | || | |||| | || | ||| Sbjct 532703 AATGAATAGATGTTAATTTACCGTAATTTGGT---TC-AGCAACATGAATATTAAAAGAT 532758 Query 24800 TGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGAT 24859 ||| |||| || ||| ||| || ||||| | | || | ||||| | ||| Sbjct 532759 TGACTTTGGTCAATAAATGCACCTCTGTCAGCAGCCATTTGTATCGTTGTTTTTACAGAT 532818 Query 24860 ATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGA 24919 || || || ||||||| || ||| | || || | || ||| | |||| |||||| Sbjct 532819 ATTTCCCAAACTGTTTTATACAAATCTCTAATTTCTTTAGGTATAGATTCAATGTTTTGA 532878 Query 24920 ACTGATCCATTTTCTCTCAATAGATTCAA---TCTCATATTCGGTGTCCAAAGATTA--A 24974 | |||||||| | | | ||| ||| ||| | |||| | | ||| | || | | Sbjct 532879 ATAGATCCATTGT-TATGAAT-GAT-CAAGTTTTTCATGTCCTCATCCCATAAATCAGCA 532935 Query 24975 TTTTTTCAAGATC-TCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACT 25033 | || ||||| | || | | || | ||| | | ||| || || |||||||| Sbjct 532936 ACTGTT--AGATCATGTAGTAGA-TGATGATTCACCACCTGAAACTCACCTGACAAAACA 532992 Query 25034 CTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGA 25093 | |||| | | ||| || ||||||||||||||| ||||||| |||||||| ||||| Sbjct 532993 CGTCTTTGGTAGATGTTAGATGTGAATGGTTCAAAAGATTCATTGTTTCCTAATATTTGG 533052 Query 25094 GAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACA 25153 | ||| || || || |||||| |||| || ||||||||||| | ||||| ||| || Sbjct 533053 GCAGTGGAAGCAGTAGGCATTGGAGCTAACAAAAGCGAATTTCTGAGACCATGTTTTGCA 533112 Query 25154 ATCT 25157 |||| Sbjct 533113 ATCT 533116 >seq1057 Length=1009321 Score = 206 bits (228), Expect = 1e-48 Identities = 287/402 (71%), Gaps = 0/402 (0%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | ||| ||||| || || ||||| | |||||||| | ||||| |||| | Sbjct 686808 TCCACTCTTTTCATGAATAAGTCAGGTATCCATAAAGCATAAAAGAGTTCTCTTGCTCGC 686749 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | ||||||||| || ||| ||||| | ||||||||| || || || || | |||||| Sbjct 686748 ACTTCTTCTTTACCAGTATTTTTTTTCAAATCTAAGAATTCGAATATGTCAGCATGCCAT 686689 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 ||||||||||| ||||||||| ||| ||| || |||||||| || || || | Sbjct 686688 GGTTCTAAATAAATAGCAAAAGCACCAGGTCTCTTGTTACCACCTTGGTCAACATAGCGA 686629 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 || || | |||| | ||| | ||||||||||| | ||| |||| | || ||||| | | Sbjct 686628 GCTGTATTATTGTAGACTCTTAACATTGGAACAAGACCATTTGATACGCCATTTGTACCA 686569 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| | | || | ||||||||| ||| |||||| || || || ||||| || Sbjct 686568 GCAATGTAAGTACCCTTAGATCTAATACAGTGGACATGAAGTCCAATCCCTCCAGCTGAT 686509 Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 || ||||| ||||| | | | ||||| |||| |||| ||||| ||| ||||| Sbjct 686508 TTAGAAATGAGAGCACATTGTTTTAGGGTATCATAAATCCCTTCAATGCTGTCATCTTTC 686449 Query 26282 ATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTT 26323 ||| | | | ||||||||||||||||| | | ||| |||| Sbjct 686448 ATTGCAATGAGGAAACAAGAAGATAATTGAGGACGAGGTGTT 686407 Score = 129 bits (142), Expect = 3e-25 Identities = 326/484 (67%), Gaps = 20/484 (4%) Strand=Plus/Minus Query 24684 CTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAA 24743 |||| ||||| ||||| | || ||||| |||||||||||| | | |||||| | |||| Sbjct 688012 CTGCCGGTTTGGTTCTCAAGTAGTACATACCAGTTTTCAATCCCATTTTCCAAGCATAAA 687953 Query 24744 AATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAG----TTCATCGAT 24799 |||| || ||||||| ||| | |||| | || | |||| | || | ||| Sbjct 687952 AATGAATAGATGTTAATTTACCGTAATTTGGT---TC-AGCAACATGAATATTAAAAGAT 687897 Query 24800 TGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGAT 24859 ||| |||| || ||| ||| || ||||| | | || | ||||| | ||| Sbjct 687896 TGACTTTGGTCAATAAATGCACCTCTGTCAGCAGCCATTTGTATCGTTGTTTTTACAGAT 687837 Query 24860 ATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGA 24919 || || || ||||||| || ||| | || || | || ||| | |||| |||||| Sbjct 687836 ATTTCCCAAACTGTTTTATACAAATCTCTAATTTCTTTAGGTATAGATTCAATGTTTTGA 687777 Query 24920 ACTGATCCATTTTCTCTCAATAGATTCAA---TCTCATATTCGGTGTCCAAAGATTA--A 24974 | |||||||| | | | ||| ||| ||| | |||| | | ||| | || | | Sbjct 687776 ATAGATCCATTGT-TATGAAT-GAT-CAAGTTTTTCATGTCCTCATCCCATAAATCAGCA 687720 Query 24975 TTTTTTCAAGATC-TCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACT 25033 | || ||||| | || | | || | ||| | | ||| || || |||||||| Sbjct 687719 ACTGTT--AGATCATGTAGTAGA-TGATGATTCACCACCTGAAACTCACCTGACAAAACA 687663 Query 25034 CTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGA 25093 | |||| | | ||| || ||||||||||||||| ||||||| |||||||| ||||| Sbjct 687662 CGTCTTTGGTAGATGTTAGATGTGAATGGTTCAAAAGATTCATTGTTTCCTAATATTTGG 687603 Query 25094 GAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACA 25153 | ||| || || || |||||| |||| || ||||||||||| | ||||| ||| || Sbjct 687602 GCAGTGGAAGCAGTAGGCATTGGAGCTAACAAAAGCGAATTTCTGAGACCATGTTTTGCA 687543 Query 25154 ATCT 25157 |||| Sbjct 687542 ATCT 687539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032610915700