Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1835 152 6e-32 seq1057 152 6e-32 >seq1835 Length=830947 Score = 152 bits (168), Expect = 6e-32 Identities = 496/750 (66%), Gaps = 28/750 (4%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||||| ||||| | || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 533707 TGGAAAGCTATAATTGAAGCACAGGTTGAAACCGGAACACCATACATGCTCTACAAGGAT 533648 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 | || |||| || ||||| ||||| |||||||| || || || || || |||||| Sbjct 533647 TCATGCAACAGAAAAAGTAATCAAAAAAATTTGGGCACCATTAAATGCAGTAACCTTTGC 533588 Query 75998 ACGGAAATTTTAGAGTACAC-AGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAAT 76056 || |||||| | || || || || | ||||| || ||||| ||||| |||||||| Sbjct 533587 ACTGAAATTGTTGAATATACTTCATCA-GATGAAGTTGCAGTTTGTAATTTAGCATCAAT 533529 Query 76057 CGCCCTTCCAAAGTATGTCAATGA-AGAGACTCGCACTTTTGATTATGAAAAACTTCATG 76115 || | | || ||| ||||| | | || || | |||| ||| | | | Sbjct 533528 TGCATTGAATATGTTTGTAAATGATAACAAAACGTACAACT--TTAT--AAAGTTAAAAG 533473 Query 76116 AAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 || | || || | | | || ||||||| ||| | | ||||| |||| || || | Sbjct 533472 AAGTTACTAAAACTATAACACAAAATCTGAACAAAATTATTGATGTGAATTACTACCCAG 533413 Query 76176 T-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGT 76234 | ||| || ||| || |||||| |||||||||| ||||| | || || ||||| Sbjct 533412 TCCCAGA-GGCTAAAAAATCAAATATGAGACACAGACCCATTGGAATTGGAGTACAAGGC 533354 Query 76235 CTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATGAAGC--CAAGGAG 76291 | || |||| ||| | ||| ||| ||| ||| ||| | |||||| ||| | Sbjct 533353 TTAGCTGATGCCTTTGTATTGATGCGCATAC-CATATGA---AAGTGAAGCTGCAATTAA 533298 Query 76292 A-TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATT 76350 | | ||| | || || ||||| || ||| | | | || || || ||||||||||| Sbjct 533297 ATTAAATCAGCAGATATTCGAAACTATTTATTATGGTGCACTAGAAGCAAGTTGTGAATT 533238 Query 76351 GGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCT 76410 ||||| | || || ||||||| ||| ||| ||| || || || | | Sbjct 533237 AGCTGAGAAGTATGGAGTGTACGAGACATATGAAGGTAGTCCTGCTAGTCAGGGCATATT 533178 Query 76411 TCAGTTTGATATGTGG--GAAGGTGAAACCAAGCTCAACTA-CGACTGGGATGTTCTCAA 76467 |||| || |||||| |||||| || | || | || ||||||| || || Sbjct 533177 ACAGTACGACATGTGGAACAAGGTG---CCTA-CTGATTTATGGACTGGGCATCCCTGAA 533122 Query 76468 GGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACA 76525 || || ||| | | ||||| | || |||||| | || |||||||| || Sbjct 533121 AGAGAAGATTGCAA--AACATGGTCTCAGAAATTCGCTTTTGTTAGCTCCAATGCCTACT 533064 Query 76526 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATC 76585 || ||||| || ||||| || || || ||||||| |||||||||| |||| | |||||| Sbjct 533063 GCTTCCACTGCCCAAATATTAGGAAACAATGAATCTTTTGAACCATTCACATCTAACATC 533004 Query 76586 TACCTGAGAAGAACCCTCGCAGGTGAGTTT 76615 |||| ||| | | ||||||||||| Sbjct 533003 TACCAAAGACGTGTTTTGTCAGGTGAGTTT 532974 >seq1057 Length=1009321 Score = 152 bits (168), Expect = 6e-32 Identities = 496/750 (66%), Gaps = 28/750 (4%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||||| ||||| | || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 686948 TGGAAAGCTATAATTGAAGCACAGGTTGAAACCGGAACACCATACATGCTCTACAAGGAT 687007 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 | || |||| || ||||| ||||| |||||||| || || || || || |||||| Sbjct 687008 TCATGCAACAGAAAAAGTAATCAAAAAAATTTGGGCACCATTAAATGCAGTAACCTTTGC 687067 Query 75998 ACGGAAATTTTAGAGTACAC-AGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAAT 76056 || |||||| | || || || || | ||||| || ||||| ||||| |||||||| Sbjct 687068 ACTGAAATTGTTGAATATACTTCATCA-GATGAAGTTGCAGTTTGTAATTTAGCATCAAT 687126 Query 76057 CGCCCTTCCAAAGTATGTCAATGA-AGAGACTCGCACTTTTGATTATGAAAAACTTCATG 76115 || | | || ||| ||||| | | || || | |||| ||| | | | Sbjct 687127 TGCATTGAATATGTTTGTAAATGATAACAAAACGTACAACT--TTAT--AAAGTTAAAAG 687182 Query 76116 AAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 || | || || | | | || ||||||| ||| | | ||||| |||| || || | Sbjct 687183 AAGTTACTAAAACTATAACACAAAATCTGAACAAAATTATTGATGTGAATTACTACCCAG 687242 Query 76176 T-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGT 76234 | ||| || ||| || |||||| |||||||||| ||||| | || || ||||| Sbjct 687243 TCCCAGA-GGCTAAAAAATCAAATATGAGACACAGACCCATTGGAATTGGAGTACAAGGC 687301 Query 76235 CTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATGAAGC--CAAGGAG 76291 | || |||| ||| | ||| ||| ||| ||| ||| | |||||| ||| | Sbjct 687302 TTAGCTGATGCCTTTGTATTGATGCGCATAC-CATATGA---AAGTGAAGCTGCAATTAA 687357 Query 76292 A-TGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATT 76350 | | ||| | || || ||||| || ||| | | | || || || ||||||||||| Sbjct 687358 ATTAAATCAGCAGATATTCGAAACTATTTATTATGGTGCACTAGAAGCAAGTTGTGAATT 687417 Query 76351 GGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCT 76410 ||||| | || || ||||||| ||| ||| ||| || || || | | Sbjct 687418 AGCTGAGAAGTATGGAGTGTACGAGACATATGAAGGTAGTCCTGCTAGTCAGGGCATATT 687477 Query 76411 TCAGTTTGATATGTGG--GAAGGTGAAACCAAGCTCAACTA-CGACTGGGATGTTCTCAA 76467 |||| || |||||| |||||| || | || | || ||||||| || || Sbjct 687478 ACAGTACGACATGTGGAACAAGGTG---CCTA-CTGATTTATGGACTGGGCATCCCTGAA 687533 Query 76468 GGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACA 76525 || || ||| | | ||||| | || |||||| | || |||||||| || Sbjct 687534 AGAGAAGATTGCAA--AACATGGTCTCAGAAATTCGCTTTTGTTAGCTCCAATGCCTACT 687591 Query 76526 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATC 76585 || ||||| || ||||| || || || ||||||| |||||||||| |||| | |||||| Sbjct 687592 GCTTCCACTGCCCAAATATTAGGAAACAATGAATCTTTTGAACCATTCACATCTAACATC 687651 Query 76586 TACCTGAGAAGAACCCTCGCAGGTGAGTTT 76615 |||| ||| | | ||||||||||| Sbjct 687652 TACCAAAGACGTGTTTTGTCAGGTGAGTTT 687681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596551732740480