Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1626 163 5e-35 seq1580 152 9e-32 seq535 140 6e-28 seq1732 122 2e-22 seq1706 96.9 6e-15 seq713 84.2 4e-11 >seq1626 Length=284755 Score = 163 bits (180), Expect = 5e-35 Identities = 111/123 (90%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 263790 ATAAAGGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCC 263849 ||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| Sbjct 253251 ATAGAGGGAGGTCCGTAGCTACTACGTAAACCGGTGCTGGCGAGGAACCGGTCTAACTCC 253192 Query 263850 TTGTCATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAATATAATAAC 263909 | ||||||||||||||||||||| ||||||||||||||||||||| |||||||| | Sbjct 253191 TCGTCATCAGATATGTTGAAGCG--TAAGCAATCATATAATGGTAA---AATATAATGTC 253137 Query 263910 AAA 263912 ||| Sbjct 253136 AAA 253134 >seq1580 Length=300615 Score = 152 bits (168), Expect = 9e-32 Identities = 98/106 (92%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 263794 AGGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGT 263853 ||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||| || Sbjct 273122 AGGGAAGTCCGTAGCTACTACGTAAACCGGTGCTGGCGAGGAACCGGTCTAACTCCTCGT 273063 Query 263854 CATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATA 263899 ||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 273062 CATCAGATATGTTGAAGCG--TAAGCAATCATATAATGGTAAAATA 273019 >seq535 Length=1858795 Score = 140 bits (154), Expect = 6e-28 Identities = 175/236 (74%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| || |||||||| || || || | ||||| ||||| ||||| |||||||| Sbjct 56738 TTTACATTCCACCTCTTAACTTAAA-ACTAAATGCAGTGTAGATTCTTTTTGAATATTAT 56796 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTT-CCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | ||| || | ||| || || || || || ||||| ||||| Sbjct 56797 AGTCGGAAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGG 56856 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||| ||||| ||||| ||||| | ||||| |||| || || || || Sbjct 56857 TCAGGTGGAATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGAT 56916 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||||| |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 56917 GGCTCAACTTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCAT 56971 Score = 140 bits (154), Expect = 6e-28 Identities = 175/236 (74%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| || |||||||| || || || | ||||| ||||| ||||| |||||||| Sbjct 1714250 TTTACATTCCACCTCTTAACTTAAA-ACTAAATGCAGTGTAGATTCTTTTTGAATATTAT 1714192 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTT-CCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | ||| || | ||| || || || || || ||||| ||||| Sbjct 1714191 AGTCGGAAAGTGTGCGGCCATCTTCCAGTTGCTTGGCCTGCGAAGATCAATCTTTGTTGG 1714132 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||| ||||| ||||| ||||| | ||||| |||| || || || || Sbjct 1714131 TCAGGTGGAATTCCCTCTTTGTCTTGAATTTTTGCTTTTACATTTTCGATGGTGTCTGAT 1714072 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||||| |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 1714071 GGCTCAACTTCTAAAGTTATTGTTTT-CCAGTCAAGGTTTTGACAAAGATTTGCAT 1714017 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || | ||||| || | || | ||| || ||| || Sbjct 57416 ATTTGCATACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTG 57475 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || | || || ||||| || || | || || || Sbjct 57476 TAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGG 57535 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||| ||||| ||||| ||||| | ||| | ||| ||| || || || Sbjct 57536 TCAGGTGGGATTCCCTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATTGTGTCAGAG 57595 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| || || ||||||||||| || | ||||| ||||| |||||||| Sbjct 57596 GGCTCAACTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 57651 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || | ||||| || | || | ||| || ||| || Sbjct 1713572 ATTTGCATACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTG 1713513 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || | || || ||||| || || | || || || Sbjct 1713512 TAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGG 1713453 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||| ||||| ||||| ||||| | ||| | ||| ||| || || || Sbjct 1713452 TCAGGTGGGATTCCCTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATTGTGTCAGAG 1713393 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| || || ||||||||||| || | ||||| ||||| |||||||| Sbjct 1713392 GGCTCAACTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 1713337 >seq1732 Length=1186882 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| | ||| | ||| || || | || | ||||| ||| ||||| || Sbjct 785009 ATACCACCTCGGAGTCGCAATACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCT 784950 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| ||||||||||| || || || || |||| ||| ||||| || Sbjct 784949 GAGAGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGG 784890 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||| | || | ||| ||||| || |||| |||| Sbjct 784889 GGAATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTCTCGATAGTGTCTGAAGGCTCA 784830 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || ||||| || || ||||| || || || ||||| Sbjct 784829 ACTTCAAGGGTAATCGTCTTACCAGTGAGAGTTTTCACGAAAATCTGCAT 784780 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || ||||| || || || |||| || ||||| ||||| || ||||||||| Sbjct 784706 TCTTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCTTTA 784647 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | |||| ||| || ||||| | ||| ||||| || || ||| Sbjct 784646 TCTTGAATTTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCGACTTCAAGCGTAATA 784587 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | |||||||| || || ||||| Sbjct 784586 GTTTTACCCGTCAAGGTTTTTACGAAAATCTGCAT 784552 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| || || || || ||||| | || | ||||| |||||| ||||| Sbjct 785692 ATACCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCA 785633 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || ||||| |||||||||||||| || | | ||| || ||||| Sbjct 785632 GAAAGAGTGCGTCCGTCTTCTAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGG- 785574 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||| | || ||||||||| |||| |||| Sbjct 785573 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCA 785514 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || | || ||||| || || ||||| Sbjct 785513 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785464 Score = 114 bits (126), Expect = 2e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| || || || || ||||| | || | ||||| |||||| |||||| Sbjct 787281 ATACCACCTCGCAGACGGAGCACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCG 787222 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| ||||||||||| || ||||| || | | ||| || || || Sbjct 787221 GACAAAGTGCGACCATCCTCTAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGG- 787163 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || |||| ||| | ||| ||| || || || | ||| Sbjct 787162 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGATGGTTCA 787103 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || || || || ||||| Sbjct 787102 ACCTCCAGAGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 787053 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || || ||||| | || | |||||| || || |||||| Sbjct 786146 ATACCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCG 786087 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || || | ||| || || || ||||||| | ||| || ||||| Sbjct 786086 GAAAGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGG- 786028 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||| | || ||||||||| |||| |||| Sbjct 786027 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCA 785968 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || | || ||||| || || ||||| Sbjct 785967 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785918 Score = 100 bits (110), Expect = 5e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||| || || || || ||||| | ||| | ||||| || || ||||| Sbjct 786826 ATACCTCCTCGCAGACGGAGCACAAGATGAAGTGTGGATTCTTTCTGGATGTTGTAGTCA 786767 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || || || |||||||||||||| || | | ||| || ||||| Sbjct 786766 GAAAGAGTGCGTCCGTCTTCCAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGG- 786708 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||| | || ||||||||| |||| ||| Sbjct 786707 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGTTCA 786648 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || | || ||||| || || ||||| Sbjct 786647 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 786598 >seq1706 Length=214366 Score = 96.9 bits (106), Expect = 6e-15 Identities = 89/109 (82%), Gaps = 8/109 (7%) Strand=Plus/Plus Query 263797 GAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAA--CTCCTTGTC 263854 ||||||||||||||| | |||| ||||||||| |||| ||||||| ||| ||||| ||| Sbjct 97093 GAGGTCCGTAGCTACCACGTAAACCGGTGCTGGCGAGAAACCGGTATAAACCTCCTCGTC 97152 Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGT--AATATAAT 263901 || |||||||||||||| ||||||| | || |||| |||||||| Sbjct 97153 ATGCGATATGTTGAAGCG--TAAGCAA--AGTTATTGGTAGAATATAAT 97197 >seq713 Length=456993 Score = 84.2 bits (92), Expect = 4e-11 Identities = 120/168 (71%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 146164 TTTTAAAGATTGGCCACCATCTATTTCACAAAAACCAGAAGACTTAGCAGAAGCTGGATT 146223 ||||||||| ||||||| || || ||||||||| ||||| | || || ||||| || Sbjct 320633 TTTTAAAGACTGGCCACGATGCATGCGACAAAAACCTGAAGAACTCGCCGAGGCTGGCTT 320574 Query 146224 CTTTTATACGGGATTAAGCGATAAAGTTAAATGCTTCTATTGTGATGGCGGATTAAAAGA 146283 ||||| || || | || ||| || || || ||||| ||||| ||||||||||| Sbjct 320573 -TTTTACACTGGTCAGGGAGACAAAACCAAGTGTTTTTATTGCGATGGTGGATTAAAAGA 320515 Query 146284 TTGGAAAGCGGGTGAATTACCTTGGAAAGAACACGCTCGTTGGTATGA 146331 |||| | ||| |||| ||| || ||||||| | |||| ||| Sbjct 320514 TTGGGAGAACCATGACGTACCCTGGGAACAACACGCAAGGTGGTTTGA 320467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899627455350720