Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq535 125 1e-23 seq1732 113 7e-20 seq1772 84.2 3e-11 >seq535 Length=1858795 Score = 125 bits (138), Expect = 1e-23 Identities = 173/237 (73%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||||||| | || || |||||||| || || Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAGCCATCA 56913 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| ||||| ||||| || || || || || ||| Sbjct 56912 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 56853 Query 155943 CAAAGATTGATTTATGCCGG-TAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | || || ||||| || |||||| | | || | || || ||||| Sbjct 56852 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 56793 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTaaaa 156056 ||| ||||| | || || |||||||| ||||| |||||||| || ||||||| Sbjct 56792 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAAAA 56737 Score = 125 bits (138), Expect = 1e-23 Identities = 173/237 (73%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||||||| | || || |||||||| || || Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAGCCATCA 1714075 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| ||||| ||||| || || || || || ||| Sbjct 1714076 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 1714135 Query 155943 CAAAGATTGATTTATGCCGG-TAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | || || ||||| || |||||| | | || | || || ||||| Sbjct 1714136 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 1714195 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTaaaa 156056 ||| ||||| | || || |||||||| ||||| |||||||| || ||||||| Sbjct 1714196 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAAAA 1714251 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||| |||||||| ||| | ||||| || ||| Sbjct 57651 ATGCAAATCTTTGTCAAAACCTTGACTGGTAAAACTATCACACTGGAAGTTGAGCCCTCT 57592 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| |||||| ||||| ||||| || || || || || || Sbjct 57591 GACACAATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAGGGAATCCCACCTGACCAG 57532 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || |||| | |||||||||||||| |||||| | | || | || || || || Sbjct 57531 CAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 57472 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || || || Sbjct 57471 ATTCAGAAGGAGTCCACTCTTCACTTGGTATT 57440 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||| |||||||| ||| | ||||| || ||| Sbjct 1713337 ATGCAAATCTTTGTCAAAACCTTGACTGGTAAAACTATCACACTGGAAGTTGAGCCCTCT 1713396 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| |||||| ||||| ||||| || || || || || || Sbjct 1713397 GACACAATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAGGGAATCCCACCTGACCAG 1713456 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || |||| | |||||||||||||| |||||| | | || | || || || || Sbjct 1713457 CAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 1713516 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| || || || Sbjct 1713517 ATTCAGAAGGAGTCCACTCTTCACTTGGTATT 1713548 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| || || || || ||| | || |||||| ||| Sbjct 57200 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAGACCATCACACTCGAGGTCGAACCTTCA 57141 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| || || ||||| || || || || || || Sbjct 57140 GACACAATCGAAAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAG 57081 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || |||| | |||||||||||||| |||||| | | || | || || || || Sbjct 57080 CAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 57021 Query 156003 ATATCCAAAGAGGCGACGCTTCA-TTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || || |||||| | | ||||||||||| Sbjct 57020 ATTCAGAAGGAATCTACACTGCATTTTAGTTCTTCGTCTAAGAGGCGGT 56972 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||| || || || || ||| | || |||||| ||| Sbjct 1713788 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAGACCATCACACTCGAGGTCGAACCTTCA 1713847 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| || || ||||| || || || || || || Sbjct 1713848 GACACAATCGAAAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAG 1713907 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || |||| | |||||||||||||| |||||| | | || | || || || || Sbjct 1713908 CAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 1713967 Query 156003 ATATCCAAAGAGGCGACGCTTCA-TTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || || |||||| | | ||||||||||| Sbjct 1713968 ATTCAGAAGGAATCTACACTGCATTTTAGTTCTTCGTCTAAGAGGCGGT 1714016 >seq1732 Length=1186882 Score = 113 bits (124), Expect = 7e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| || ||||||||||| | |||||||| || Sbjct 784552 ATGCAGATTTTCGTAAAAACCTTGACGGGTAAAACTATTACGCTTGAAGTCGAGCCATCC 784611 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| |||||| ||||||||||||||||| |||||||| || Sbjct 784612 GACACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAGATCAG 784671 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| ||||||| | || || |||||| | ||||| Sbjct 784672 CAACGATTGATCTTCGCAGGAAAGCAGTTGGAAGA 784706 Score = 87.8 bits (96), Expect = 3e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| || || || || | || || || ||| Sbjct 786371 ATGCAGATTTTCGTTAAGACCCTTACTGGCAAGACCATCACTCTGGAGGTTGAGCCGTCT 786430 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||| || |||||||| |||||||| || ||||| || Sbjct 786431 GACACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGCATCCC-CCAGACCAG 786489 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| || || |||||||| |||||| | | || || ||||||||||| Sbjct 786490 CAGCGTCTAATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTATAAC 786549 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || ||| | ||| Sbjct 786550 ATCCAGAAAGAGTCAACCCTCCATCTTGTG 786579 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| |||||||| || || || || | || || ||| |||| Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||||| || || ||||| || || || || || || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||| || || || | |||||| | ||||||| ||||||||||| Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| | || || ||| | ||| Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTG 785445 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | ||||| ||||| || || | ||||| ||| |||| Sbjct 785008 ATGCAGATATTTGTCAAGACTCTTACTGGCAAAACCATCACTCTCGAAGTTGAACCTTCT 785067 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||| ||||||||||| |||||||| || Sbjct 785068 GACACAATTGAAAATGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 785127 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | | || | ||| || |||||| | |||||| Sbjct 785128 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGAT 785163 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||||| | | || || | || || || ||| Sbjct 786145 ATGCAGATTTTCGTTAAGACCCTTACTGGAAGACC-ATCACTCTGGAGGTTGAGCCGTCT 786203 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||| || |||||||| |||||||| || ||||| || Sbjct 786204 GACACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGCATCCC-CCAGACCAG 786262 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| || || |||||||| |||||| | | || || ||||||||||| Sbjct 786263 CAGCGTCTAATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTATAAC 786322 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| | || |||||| | ||| Sbjct 786323 ATCCAGAAAGAATCAACCCTTCATCTTGTG 786352 >seq1772 Length=243193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/230 (69%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 |||||| ||||||| ||||| | ||| ||||| || ||||| || ||||||| ||| | | Sbjct 41689 AAACCT-CATCTCTAGATATCAGTTCATTACTGAATGTTAAACCAGGCATTAAACCACGT 41631 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC-GCACGC 18294 ||||| | ||| || || || || || || | || ||||| || || || || ||| || Sbjct 41630 TTTTTCATCCAGAAAATGGAGGCAAAGCTGCCTGAGAAGAAAATTCCTTCGACTGCA-GC 41572 Query 18295 GAACGCTATTAATCTTTCAGCAAAACTGTATTTA---TTGCTCAGTATCCATTTTTGTGC 18351 || || || | || |||||||| ||| | | ||||| ||||||| | || Sbjct 41571 AAATGCGATAATTCGCTCAGCAAA--TGT-TGCAGACTTGCTACCAATCCATTGCAGGGC 41515 Query 18352 CCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA 18401 ||| || | | | ||| || | | |||| ||||||||||||| Sbjct 41514 CCAGTCAGCCTTCTTCTTCACACAAGGGAGAGTCTCAATAGCATTAAACA 41465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731850080433600