Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1732 145 2e-29 seq535 118 2e-21 seq1046 98.7 2e-15 seq713 87.8 4e-12 >seq1732 Length=1186882 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || | ||| | || | ||||| ||| |||||||| Sbjct 785465 ATACCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCT 785406 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| ||||||||||| ||||||||||| | | ||| || ||||| Sbjct 785405 GACAAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGG 785346 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || ||||| |||||||| || | || || | ||| Sbjct 785345 GGGATACCCTCTTTGTCCTGAATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCA 785286 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| |||||||| || ||||| | |||||||||||| Sbjct 785285 ACCTCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCAT 785236 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| || || ||||| | || | || | ||||| || |||||||| Sbjct 785009 ATACCACCTCGGAGTCGCAATACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCT 784950 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || |||||||||||||| ||||| |||| ||| ||||| || Sbjct 784949 GAGAGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGG 784890 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| || ||||| |||| ||||| | || Sbjct 784889 GGAATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTCTCGATAGTGTCTGAAGGCTCA 784830 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| || |||||||| | ||||| | || |||||||| Sbjct 784829 ACTTCAAGGGTAATCGTCTTACCAGTGAGAGTTTTCACGAAAATCTGCAT 784780 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || | ||||| || | ||||| ||| || || ||| Sbjct 785237 ATACCACCTCGCAGACGGAGCACAAGATGTAGTGTGGATTCTTTCTGGATGTTGTAGTCA 785178 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||| || || ||||||||||| | | ||| || || || Sbjct 785177 GAAAGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGA 785118 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || |||||||| || | || || | ||| Sbjct 785117 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCA 785058 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| |||||||| ||||| | || || | |||||||||||| Sbjct 785057 ACTTCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCAT 785008 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | || | ||| | || | ||||| || || || ||| Sbjct 784781 ATACCGCCACGGAGACGCAGAACAAGATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCA 784722 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || | || ||||| || || || || ||||| |||| || ||||| || Sbjct 784721 GACAGTGTGCGGCCGTCTTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGATCTGGA 784662 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | || || | || Sbjct 784661 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCG 784602 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| |||||||| || || ||||| | || |||||||| Sbjct 784601 ACTTCAAGCGTAATAGTTTTACCCGTCAAGGTTTTTACGAAAATCTGCAT 784552 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | |||||| ||| || || || Sbjct 786146 ATACCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCG 786087 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || |||| ||| || ||||| || |||| | ||| || ||||| Sbjct 786086 GAAAGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGG- 786028 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || ||| || || |||| ||| || | || Sbjct 786027 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCA 785968 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || || ||||| || || || | || |||||||| Sbjct 785967 ACCTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785918 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || | ||| | || | ||||| ||||| || || Sbjct 787281 ATACCACCTCGCAGACGGAGCACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCG 787222 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || |||||||| ||||||||||| | | ||| || || || Sbjct 787221 GACAAAGTGCGACCATCCTCTAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGG- 787163 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| || || || | || || | ||| Sbjct 787162 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGATGGTTCA 787103 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | || || | || |||||||| Sbjct 787102 ACCTCCAGAGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 787053 >seq535 Length=1858795 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| ||||| || || | ||| | ||| || || || || || Sbjct 57422 ATACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCG 57481 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| || ||||| || ||||| | || || || |||||| Sbjct 57482 GAGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGT 57541 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| |||||| ||| || || || | || || | || Sbjct 57542 GGGATTCCCTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCA 57601 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||||||||| || ||||| | ||| || ||||| Sbjct 57602 ACTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 57651 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| ||||| || || | ||| | ||| || || || || || Sbjct 1713566 ATACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCG 1713507 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| || ||||| || ||||| | || || || |||||| Sbjct 1713506 GAGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGT 1713447 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| |||||| ||| || || || | || || | || Sbjct 1713446 GGGATTCCCTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCA 1713387 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||||||||| || ||||| | ||| || ||||| Sbjct 1713386 ACTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 1713337 >seq1046 Length=465179 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || |||||||| | || || |||| ||||| ||||||||||| ||||| | | Sbjct 190196 GATGTTGTAATCAGAGAGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGATAAGACG 190137 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || || ||||| ||||| ||||| || || || || || ||||| || | Sbjct 190136 TTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTCACATTTTCGATGGT 190077 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | ||| || || || || ||||||||||| || | ||||| | || ||||| Sbjct 190076 GTCTGAGGCTTCCACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTG 190017 Query 192534 CATTTTA 192540 |||| || Sbjct 190016 CATTGTA 190010 >seq713 Length=456993 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 125319 CCATCTTGCGTGTTGTTCCCATACTATATCGTTAGTTTCCCAATCTTTTAAACCAAGATC 125378 ||| ||||||||||||||||| || || | | |||||||||||||| ||| ||| Sbjct 320472 CCACCTTGCGTGTTGTTCCCAGGGTACGTCATGGTTCTCCCAATCTTTTAATCCACCATC 320531 Query 125379 GCAATAGAAACATTTGACCTTATCACCACAATTAGTATAATAAAAACCAGCTTCAGCTAG 125438 |||||| ||||| ||| || || || | ||| ||| |||| ||||| || || || Sbjct 320532 GCAATAAAAACACTTGGTTTTGTCTCCCTGACCAGTGTAA-AAAAGCCAGCCTCGGCGAG 320590 Query 125439 TTCTTCGGGAGTTTGTTTTAAACTCTGTGGCCAATTTTTAAAA 125481 |||||| || ||||| | | ||||||| | ||||||| Sbjct 320591 TTCTTCAGGTTTTTGTCGCATGCATCGTGGCCAGTCTTTAAAA 320633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984449777694600