Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1835 239 1e-57 seq1057 239 1e-57 seq2059 114 4e-20 seq1180 96.9 1e-14 >seq1835 Length=830947 Score = 239 bits (264), Expect = 1e-57 Identities = 603/904 (67%), Gaps = 17/904 (2%) Strand=Plus/Plus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTG-GTTACGT 155532 |||||| |||||||||||||||| || || | |||| | ||| || || || | Sbjct 533414 TGGGTAGTAATTCACATCAATAATTTTGTTCAGATTT-TGTGTTATAGTTTTAGTAACTT 533472 Query 155533 CTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAG 155592 || ||| || | | ||| | ||||| | ||||||||||||||| | |||| | Sbjct 533473 CTTTTAACTTTATAAAGTTGTACGTTTTGTTATCATTTACAAACATATTCAATGCAATTG 533532 Query 155593 ACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 | || | |||||| || ||| || | || | | | ||||| ||||| ||| ||| Sbjct 533533 ATGCTAAATTACAAACTGCAACTTCATCTGATGAAG-TATATTCAACAATTTCAGTGCAA 533591 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 |||||| | || |||||||| ||||| || || ||| ||| ||||| || | |||| Sbjct 533592 AGGTTACTGCATTTAATGGTGCCCAAATTTTTTTGATTACTTTTTCTGTTGCATGAATCC 533651 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCAGA 155769 ||||| || |||||||| ||||| || || | |||||| || | || |||| || | Sbjct 533652 TTGTAGAGCATGTATGGTGTTCCGGTTTCAACCTGTGCTTCAATTATAGCTTTCCACAAA 533711 Query 155770 GGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCG 155829 | | || | | ||| || | | |||||| ||||||||| ||||| | Sbjct 533712 ATTT--GAGCTCTGACTTGTTTCACAAAACGGCCTTCACTTTCATATTTCTCATACAAAG 533769 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | || || || | || ||| |||||||| || | || |||||| | | Sbjct 533770 CCTCAAATTCTTCTCCCCAGCAGTCAGATAGTCCAGGACATTCATGGGGGCACATGATAC 533829 Query 155890 ACCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATAGCATA 155947 ||| ||| |||| | || ||| || ||| |||| ||| ||| | |||||| Sbjct 533830 TCCAGTTTTGATTA--GTTTCCACTCTTTTCATGAATAAGTCAGGTATCCATAAAGCATA 533887 Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 || || || ||||| | ||| || | | || ||| || | |||||||||| Sbjct 533888 AAAGAGTTCTCTTGC-TCGCACTTCTTCTTTACCAGTATTTTTTTTCAAATCTAAGAATT 533946 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---C 156063 | || |||| ||| ||| || | ||| ||||||||| |||| |||||| | Sbjct 533947 CGAATATGTCAGCATGCCATGGTTCTAAATAAATAGCAAAAGCACCAGGTCTCTTGTTAC 534006 Query 156064 CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 |||| || || ||||| ||||| || |||||| |||| | || ||| |||| || ||||| Sbjct 534007 CACCTTGGTCAACATAGCGAGCTGTATTATTGTAGACTCTTAACATTGGAACAAGACCAT 534066 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 | || |||||| || || ||| | | ||| || | || | || | ||| | Sbjct 534067 TTGATACGCCATTTGTACCAGCAATGTAAGTACCCTTAGATCTAATACAGTGGACATGAA 534126 Query 156184 GTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 ||||||| || || | |||||||||| |||| |||| |||| |||| |||| | Sbjct 534127 GTCCAATCCCTCCAGCTGATTTAGAAATGAGAGCACATTGTTTTAGGGTATCATAAATCC 534186 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 ||||||| ||||||| ||||| | || | || ||| ||||||||| || |||| Sbjct 534187 CTTCAATGCTGTCATCTTTCATTGCAATGAGGAAACAAGAAGATAATTGAGGACGAGGTG 534246 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363 || |||| |||||| || || ||||||| | ||||| || | ||||| ||| || Sbjct 534247 TTGCAGCTGAGAATAGAGTTGGGCTTGCATGTGTGAAATATTTTTCAGACAGCAAATTGT 534306 Query 156364 ATGT 156367 |||| Sbjct 534307 ATGT 534310 >seq1057 Length=1009321 Score = 239 bits (264), Expect = 1e-57 Identities = 603/904 (67%), Gaps = 17/904 (2%) Strand=Plus/Minus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTG-GTTACGT 155532 |||||| |||||||||||||||| || || | |||| | ||| || || || | Sbjct 687241 TGGGTAGTAATTCACATCAATAATTTTGTTCAGATTT-TGTGTTATAGTTTTAGTAACTT 687183 Query 155533 CTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAG 155592 || ||| || | | ||| | ||||| | ||||||||||||||| | |||| | Sbjct 687182 CTTTTAACTTTATAAAGTTGTACGTTTTGTTATCATTTACAAACATATTCAATGCAATTG 687123 Query 155593 ACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 | || | |||||| || ||| || | || | | | ||||| ||||| ||| ||| Sbjct 687122 ATGCTAAATTACAAACTGCAACTTCATCTGATGAAG-TATATTCAACAATTTCAGTGCAA 687064 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 |||||| | || |||||||| ||||| || || ||| ||| ||||| || | |||| Sbjct 687063 AGGTTACTGCATTTAATGGTGCCCAAATTTTTTTGATTACTTTTTCTGTTGCATGAATCC 687004 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCAGA 155769 ||||| || |||||||| ||||| || || | |||||| || | || |||| || | Sbjct 687003 TTGTAGAGCATGTATGGTGTTCCGGTTTCAACCTGTGCTTCAATTATAGCTTTCCACAAA 686944 Query 155770 GGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCG 155829 | | || | | ||| || | | |||||| ||||||||| ||||| | Sbjct 686943 ATTT--GAGCTCTGACTTGTTTCACAAAACGGCCTTCACTTTCATATTTCTCATACAAAG 686886 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | || || || | || ||| |||||||| || | || |||||| | | Sbjct 686885 CCTCAAATTCTTCTCCCCAGCAGTCAGATAGTCCAGGACATTCATGGGGGCACATGATAC 686826 Query 155890 ACCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATAGCATA 155947 ||| ||| |||| | || ||| || ||| |||| ||| ||| | |||||| Sbjct 686825 TCCAGTTTTGATTA--GTTTCCACTCTTTTCATGAATAAGTCAGGTATCCATAAAGCATA 686768 Query 155948 GAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 || || || ||||| | ||| || | | || ||| || | |||||||||| Sbjct 686767 AAAGAGTTCTCTTGC-TCGCACTTCTTCTTTACCAGTATTTTTTTTCAAATCTAAGAATT 686709 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---C 156063 | || |||| ||| ||| || | ||| ||||||||| |||| |||||| | Sbjct 686708 CGAATATGTCAGCATGCCATGGTTCTAAATAAATAGCAAAAGCACCAGGTCTCTTGTTAC 686649 Query 156064 CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 |||| || || ||||| ||||| || |||||| |||| | || ||| |||| || ||||| Sbjct 686648 CACCTTGGTCAACATAGCGAGCTGTATTATTGTAGACTCTTAACATTGGAACAAGACCAT 686589 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 | || |||||| || || ||| | | ||| || | || | || | ||| | Sbjct 686588 TTGATACGCCATTTGTACCAGCAATGTAAGTACCCTTAGATCTAATACAGTGGACATGAA 686529 Query 156184 GTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 ||||||| || || | |||||||||| |||| |||| |||| |||| |||| | Sbjct 686528 GTCCAATCCCTCCAGCTGATTTAGAAATGAGAGCACATTGTTTTAGGGTATCATAAATCC 686469 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 ||||||| ||||||| ||||| | || | || ||| ||||||||| || |||| Sbjct 686468 CTTCAATGCTGTCATCTTTCATTGCAATGAGGAAACAAGAAGATAATTGAGGACGAGGTG 686409 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363 || |||| |||||| || || ||||||| | ||||| || | ||||| ||| || Sbjct 686408 TTGCAGCTGAGAATAGAGTTGGGCTTGCATGTGTGAAATATTTTTCAGACAGCAAATTGT 686349 Query 156364 ATGT 156367 |||| Sbjct 686348 ATGT 686345 >seq2059 Length=190384 Score = 114 bits (126), Expect = 4e-20 Identities = 192/272 (71%), Gaps = 8/272 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||| || || || |||||| || ||||| || || ||| Sbjct 159589 TCCATAGCCTTTATCAAACGACGTTGGATGTATCCAGTTTCAGCGGTTTT-ACGGCAGTA 159647 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| ||||||| || ||||| ||||| | | |||| ||| || || Sbjct 159648 TCAATAAGACCTTCACGACCTCC-ATAGCGTGGAAATAAAACTCTGATGGTGTCAGACCG 159706 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | ||| | || |||||||| | || ||| || || ||||||| ||| | Sbjct 159707 GCAAGATATGAGTTTTCGACGAAACCTCTCGACTCAGGACCGTAATCGTCT---TTGATG 159763 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| ||| || || | ||| | || ||||| || || ||||||||||| Sbjct 159764 AAATGCGGCAAGGTTCTTTTACGGAATCCGAACGGAATACGTTTACCTTCAACGTTCTGT 159823 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | ||| | ||| |||||||| Sbjct 159824 TGCCCTACACAGGCAATAACCTGAGAAATATT 159855 >seq1180 Length=1058544 Score = 96.9 bits (106), Expect = 1e-14 Identities = 223/330 (68%), Gaps = 7/330 (2%) Strand=Plus/Minus Query 289018 CTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||||| |||| |||| |||||||||||||| |||||| ||| | || || | || || Sbjct 7643 CTCCTCTTTTCCTACCCACAGCATCAATTTCATCAATG-AAAGAATGCAAGGTGCATGTT 7585 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 | || |||||||| | || | || | ||| | ||||| || ||| ||||||| | Sbjct 7584 TACGAGCCATTGCAAACATATCACGGACCCTGGAAGGTCCAACGCCCACAAACATTTCCA 7525 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 || || || | || ||| ||||| | ||||| || || ||||| ||| | | Sbjct 7524 AGAACTCGGATCCTGAGACTGTGATGAAAGGCACATTAGCCTCTCCTGCAGTAGCCTTAG 7465 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 | || | |||||||| || ||||| ||||| | ||| | ||||| || | ||| | Sbjct 7464 CTAGCAAGGTCTTACCAGTACCAGGAGGTCCAGTGAGTAGGGCACCCTTAGGAATTTTAG 7405 Query 289256 C-CCCAGCAGAC-TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTC 289313 | |||| || | | |||| || |||| | ||||| || | |||| ||| | || Sbjct 7404 CGCCCA--AGTCAATGTATTGCTGAGGGTTTTTTAAGAAGTTCACAAACTCCATGATCTC 7347 Query 289314 ATATTTTGCCTCATCACATCCTGCTACATC 289343 | || || || ||||| || || ||||| Sbjct 7346 AATCTTAGCTTCTTCACACCCAGCAACATC 7317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471772417039452