Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1953 183 3e-41 seq1559 183 3e-41 seq1843 145 6e-30 seq1732 86.0 5e-12 seq1046 84.2 2e-11 seq535 82.4 6e-11 >seq1953 Length=2063305 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34487 AAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGA 34546 || |||| || | ||| || ||||| || | ||| ||||||||||||||||| ||||||| Sbjct 3597 AAGTGGCAGGTCTTCCGAGTGCCTTAGCCACTTCAGGCATGTTGACGATGACGGTCTTGA 3538 Query 34547 TGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 ||||||||||||| || ||||||||||| |||||||| ||||| ||||| |||||||| | Sbjct 3537 TGCCGTTGCCCTTGCCCTCGACCTTGGCACAGATGCGAGGCATCTTGTACCGGTAGAAGG 3478 Query 34607 CGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 | ||||||||||| ||||| |||||||| | |||||| ||| Sbjct 3477 CATCCGCCACATTCCGGTTGACGTTCACCGACCCCATGGTG 3437 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34183 TGCGTGCTAGAATATTGTGCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAG 34242 ||| |||| | | | | || |||||||| || ||||||||||||||||| || || | Sbjct 4088 TGCATGCTGGGGTCTAGAGCGGGCGGGTTCTTGAGTATGAAGGTGTTGAGTTTGTGGTTG 4029 Query 34243 AAGTGTAGCGTGCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTA 34302 |||| |||||||| || || || || || ||||| || || ||||| |||| || Sbjct 4028 AAGTCGAGCGTGCCATGGTATCCACAGGCCTTGCACCCTTGCGAGATAGTGTTACGCTTC 3969 Query 34303 GCGGACACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGG 34362 | || ||||| | ||| ||||| ||||||||||| || || |||| |||||| || ||| Sbjct 3968 GTCGATACGATCAACTCCGTCTCAGGGTTGTCACACTCAGGGCACAGCACAAATTTACGG 3909 Query 34363 ATGAA 34367 ||||| Sbjct 3908 ATGAA 3904 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 17/200 (9%) Strand=Plus/Minus Query 33584 CGGCCACTTTGGGCAGCAGC---GCCTGGTCCAAAACGCAcagcgcggtgagcgcg---- 33636 ||| ||| |||||||||||| || |||| | |||| ||||||||||||||| Sbjct 5181 CGGGCACCTTGGGCAGCAGCTCGGCGTGGTGCG---CGCAGAGCGCGGTGAGCGCGTGCA 5125 Query 33637 -----gcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtact 33691 || ||||| ||||| ||| ||||||| | |||||||||| |||||| Sbjct 5124 GCACGGCGCGCTGGGCGCGGGAGTCGGCGCGCGTGCAGCGCAGCAGCAGGCCGCGGTGGC 5065 Query 33692 tgcgcACGTCCCCGGCGAACGCCGCCGGC-CTCACCAGCACCTCGAACAGCACCAGCGGC 33750 |||||||| || || | || ||| || | ||||||||||| | || ||||||||| Sbjct 5064 GCCGCACGTCGCCCGCCAG-GCTGCCCGCGCGGACCAGCACCTCCAGCATCACCAGCGGG 5006 Query 33751 GCCTTCGACTTCACCTCCAG 33770 |||||||||||||||||||| Sbjct 5005 GCCTTCGACTTCACCTCCAG 4986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || |||| || || | ||| ||||||||||| ||| || ||||||||||| ||| Sbjct 3816 CCGTCTAGCAAATCTTGCAGCTTGGCGGAGTCGTGGCTGCCATTTACGATGAATCGCTCG 3757 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || || |||||| ||| || || || ||||| ||||| |||||||||||||| || Sbjct 3756 TTCTTAAAATCGAACTGAGTCTGAGCACCCAGTTCGCAACCGAAGTACTTTGTTGG 3701 >seq1559 Length=1066409 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34487 AAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGA 34546 || |||| || | ||| || ||||| || | ||| ||||||||||||||||| ||||||| Sbjct 210779 AAGTGGCAGGTCTTCCGAGTGCCTTAGCCACTTCAGGCATGTTGACGATGACGGTCTTGA 210720 Query 34547 TGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 ||||||||||||| || ||||||||||| |||||||| ||||| ||||| |||||||| | Sbjct 210719 TGCCGTTGCCCTTGCCCTCGACCTTGGCACAGATGCGAGGCATCTTGTACCGGTAGAAGG 210660 Query 34607 CGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 | ||||||||||| ||||| |||||||| | |||||| ||| Sbjct 210659 CATCCGCCACATTCCGGTTGACGTTCACCGACCCCATGGTG 210619 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34183 TGCGTGCTAGAATATTGTGCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAG 34242 ||| |||| | | | | || |||||||| || ||||||||||||||||| || || | Sbjct 211270 TGCATGCTGGGGTCTAGAGCGGGCGGGTTCTTGAGTATGAAGGTGTTGAGTTTGTGGTTG 211211 Query 34243 AAGTGTAGCGTGCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTA 34302 |||| |||||||| || || || || || ||||| || || ||||| |||| || Sbjct 211210 AAGTCGAGCGTGCCATGGTATCCACAGGCCTTGCACCCTTGCGAGATAGTGTTACGCTTC 211151 Query 34303 GCGGACACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGG 34362 | || ||||| | ||| ||||| ||||||||||| || || |||| |||||| || ||| Sbjct 211150 GTCGATACGATCAACTCCGTCTCAGGGTTGTCACACTCAGGGCACAGCACAAATTTACGG 211091 Query 34363 ATGAA 34367 ||||| Sbjct 211090 ATGAA 211086 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 17/200 (9%) Strand=Plus/Minus Query 33584 CGGCCACTTTGGGCAGCAGC---GCCTGGTCCAAAACGCAcagcgcggtgagcgcg---- 33636 ||| ||| |||||||||||| || |||| | |||| ||||||||||||||| Sbjct 212363 CGGGCACCTTGGGCAGCAGCTCGGCGTGGTGCG---CGCAGAGCGCGGTGAGCGCGTGCA 212307 Query 33637 -----gcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtact 33691 || ||||| ||||| ||| ||||||| | |||||||||| |||||| Sbjct 212306 GCACGGCGCGCTGGGCGCGGGAGTCGGCGCGCGTGCAGCGCAGCAGCAGGCCGCGGTGGC 212247 Query 33692 tgcgcACGTCCCCGGCGAACGCCGCCGGC-CTCACCAGCACCTCGAACAGCACCAGCGGC 33750 |||||||| || || | || ||| || | ||||||||||| | || ||||||||| Sbjct 212246 GCCGCACGTCGCCCGCCAG-GCTGCCCGCGCGGACCAGCACCTCCAGCATCACCAGCGGG 212188 Query 33751 GCCTTCGACTTCACCTCCAG 33770 |||||||||||||||||||| Sbjct 212187 GCCTTCGACTTCACCTCCAG 212168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || |||| || || | ||| ||||||||||| ||| || ||||||||||| ||| Sbjct 210998 CCGTCTAGCAAATCTTGCAGCTTGGCGGAGTCGTGGCTGCCATTTACGATGAATCGCTCG 210939 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || || |||||| ||| || || || ||||| ||||| |||||||||||||| || Sbjct 210938 TTCTTAAAATCGAACTGAGTCTGAGCACCCAGTTCGCAACCGAAGTACTTTGTTGG 210883 >seq1843 Length=1107702 Score = 145 bits (160), Expect = 6e-30 Identities = 331/493 (67%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 28809 GCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTG 28868 || || ||||| |||||| | || ||| | || || | || ||| ||||| | Sbjct 492104 GCCTACTTTGTTGAATGGGGTGTCTACCCAAGGAAGTTCCCCGTTGACCGTGTGCCCATC 492045 Query 28869 CCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAAC 28928 ||||| || | |||||| | || || ||| | || || || || || || || ||||| Sbjct 492044 CCCAATCTTACTCATCTGCTGTATGGTTTCATCCCAATCTGTGGAGGAGATGGCATCAAC 491985 Query 28929 GACGCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGT 28988 ||| | || || || ||||| |||| ||||| | || |||| |||| | Sbjct 491984 GACAGTTTGAAGGAGATCGAAGGCAGTTTCCAAGCTCTGCAGAGATCATGCAGCGGCAGG 491925 Query 28989 TCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGC 29048 |||||| || || |||| |||||||||||||| ||| | |||||||| || ||||| Sbjct 491924 GAAGATTTCAAGGTATCTATCCACGATCCTTGGGCTGCACTCCAAAAACCACAGAAGGGT 491865 Query 29049 GTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATG--GCTGCCAAGT 29106 |||| | ||||||||||| ||||| || || ||||| || | ||| | || || Sbjct 491864 TTGTCATCCTGGAACGAGCCTTACAAGGGTAACTTCGGCCAATTGATGATGTTG--AAAC 491807 Query 29107 TGGCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGACCC-T 29165 || | ||| || | || || | || || | || || ||||| || | ||||| | Sbjct 491806 AAGCGAGACCAGACCTGAAGATCTTGCCTTCTGTTGGTGGATGGACCCTGGCTGACCCGT 491747 Query 29166 TTTTATTTT--ATGCACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAAT 29223 | || |||| | |||| | | ||| || ||| || || | || ||| |||| | Sbjct 491746 TCTTCTTTTTCACTGACGAAGTGAAGAGACACCGC---TTCGTTGCTTCAGTCAAGGACT 491690 Query 29224 TTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTA 29283 | | | ||||| || || || || || |||||||| |||||||| || || |||| Sbjct 491689 TCCTCGAAACCTGGAAGTTCTTCGATGGTGTTGACATTGATTGGGAATTCCCTGGTGGTA 491630 Query 29284 AAGGCGCTAACCC 29296 |||| || ||||| Sbjct 491629 AAGGAGCCAACCC 491617 >seq1732 Length=1186882 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||||||||| || || || ||||| || |||| || ||| Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | ||||| || ||| |||||||| || | ||| || || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || ||||| |||| |||| | |||| || | ||||| ||| Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || | || | ||| | | |||||||| || Sbjct 785416 ATCCAGAAAGAATCAACCCTCCATCTTGTGCTCCGTCTGCGAGGTGG 785462 >seq1046 Length=465179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 110269 TAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GC 110327 || |||||| || || || ||||| | || || |||||||| ||| |||| ||| || Sbjct 190010 TACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTGGAAGC 190069 Query 110328 CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 || | || || ||| | || || ||||| |||||||| || | || | Sbjct 190070 CTCA-GACACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAG 190128 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 | || ||| | ||||| | || ||||||||| |||| |||| | | || | | |||| Sbjct 190129 ACCAGCAACGTCTTATCTTCGCTGGTAAACAGTTGGAAGATGGCCGTACTCTCTCTGATT 190188 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||||| ||||| ||||| || | ||| ||||| | || || |||| || || Sbjct 190189 ACAACATCCAAAAGGAATCCACCCTCCACTTGGTGCTCAGGTTGAGAGGAGGTAA 190243 >seq535 Length=1858795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | ||||| || ||||| || |||| || ||| Sbjct 57200 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAGACCATCACACTCGAGGTCGAACCTTCA 57141 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| |||||||| || | || || || Sbjct 57140 GACACAATCGAAAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAG 57081 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| |||| || | || ||||| |||||||| |||| | | ||| | | || |||||| Sbjct 57080 CAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 57021 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || |||||||| |||| Sbjct 57020 ATTCAGAAGGAATCTACACTGCA 56998 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | ||||| || ||||| || |||| || ||| Sbjct 1713788 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAGACCATCACACTCGAGGTCGAACCTTCA 1713847 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| |||||||| || | || || || Sbjct 1713848 GACACAATCGAAAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAG 1713907 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| |||| || | || ||||| |||||||| |||| | | ||| | | || |||||| Sbjct 1713908 CAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 1713967 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || |||||||| |||| Sbjct 1713968 ATTCAGAAGGAATCTACACTGCA 1713990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829544509228