Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1843 183 2e-41 seq713 179 3e-40 >seq1843 Length=1107702 Score = 183 bits (202), Expect = 2e-41 Identities = 641/987 (65%), Gaps = 23/987 (2%) Strand=Plus/Minus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || || ||||| |||||||| || || | || || || || ||| ||||| | Sbjct 492104 GCCTACTTTGTTGAATGGGGTGTCTACCCAAGGAAGTTCCCCGTTGACCGTGTGCCCATC 492045 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 ||||| || | |||||| |||| |||||||| || || || || || || || ||||| Sbjct 492044 CCCAATCTTACTCATCTGCTGTATGGTTTCATCCCAATCTGTGGAGGAGATGGCATCAAC 491985 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | || || |||||||| | || ||||| | || |||| ||| | Sbjct 491984 GACAGTTTGAAGGAGATCGAAGGCAGTTTCCAAGCTCTGCAGAGATCATGCAGCGGCAGG 491925 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 ||||||||| || |||| |||||||| ||||| || | |||||||| || ||||| Sbjct 491924 GAAGATTTCAAGGTATCTATCCACGATCCTTGGGCTGCACTCCAAAAACCACAGAAGGGT 491865 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 |||| | ||||||||||| ||||| || |||||||| || | ||| | || | Sbjct 491864 TTGTCATCCTGGAACGAGCCTTACAAGGGTAACTTCGGCCAATTGATGATGTTGAAACAA 491805 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCG--- 29429 || | || |||| || || |||| || | || || ||||| || | |||||| Sbjct 491804 GCGAGACCAGACCTGAAGATCTTGCCTTCTGTTGGTGGATGGACCCTGGCTGACCCGTTC 491745 Query 29430 TTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTT 29489 |||| ||||| |||| | | | | || || || || | || |||| || || Sbjct 491744 TTCTTTTTCACTGACGAAGTGAAGAGACACCG---CTTCGTTGCTTCAGTCAAGGACTTC 491688 Query 29490 CTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAA 29549 || | |||||||| || || || || ||||| || ||||| || || ||||| ||| Sbjct 491687 CTCGAAACCTGGAAGTTCTTCGATGGTGTTGACATTGATTGGGAATTCCCTGGTGGTAAA 491628 Query 29550 GGCGCCAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATA---ACATTTTA 29606 || |||||||| || || | || |||| | ||| | || ||| | | Sbjct 491627 GGAGCCAACCCTGATCTCGGTGCCCCTGA---AGACG--GTCACATCTACGTACAGCTGA 491573 Query 29607 CTAAAGGAATTGCGCGCAATGATGGACGAG-TTACAATTGCAA-ACGGGCAAAACGTACG 29664 | |||||| | | ||| || ||||| || | | ||| || || || | ||||| Sbjct 491572 -TGAAGGAACTCAGACAGATGTTGAACGAGCTTTC--TGCCAAGACTGGTAAGAAGTACG 491516 Query 29665 AGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTG 29724 | ||||| || ||||| ||||| |||||||| || || | ||| | | | Sbjct 491515 AATTGACTTCTGCTATCAGCTCCGGTTGGGACAAGATCCAGGTTGTGGACTACAAAGAAG 491456 Query 29725 CGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAA 29784 | || ||| | ||| | || ||| | ||||| || || || || ||||| ||||| | Sbjct 491455 CTCAGCAGTACATGGATCACATCTTCTTGATGAGTTATGACTTCAAGGGCGCTTGGTCTA 491396 Query 29785 AC-ACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGA-ACT 29842 || || | || ||| |||| | | | ||||| || |||||||| || || ||| Sbjct 491395 ACGACACACTT-GGCCACCAGGCAGGTTTGTACGCCCCAGCATGGAACCCCAAGGAGACT 491337 Query 29843 GTACAACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAAT 29902 |||| || ||| || || || || || | || || || ||| || || Sbjct 491336 -TACACAACTGACTTCGGTGTCAAATTCCTGTTGGCTCAAGGTGTTAGCCCCAAGAAGAT 491278 Query 29903 TATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGA 29962 | | || || || || ||||| || || || ||||| || || ||||| | | || Sbjct 491277 TGTCGTTGGTGTTGCTATGTATGGACGAGGCTGGACTGGAGTCAACGGTTACAAAGATGG 491218 Query 29963 CAACTATTTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTGT 30022 ||| || || || ||| |||| ||||| | || |||||| | || || || || Sbjct 491217 CAATCCGTTCACTGGTGTAGCGACTGGTCCCGTTAAAGGAACTTGGCAGGATGGTGTGGT 491158 Query 30023 CGACTATCGCCAAATTGAAAACGAAAT 30049 ||||| | | |||| |||||||| Sbjct 491157 GGACTACAGGGAGATTGCCAACGAAAT 491131 >seq713 Length=456993 Score = 179 bits (198), Expect = 3e-40 Identities = 353/510 (69%), Gaps = 19/510 (4%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || || | |||| | ||||| || || ||||| || ||||| || || ||||||||| Sbjct 320914 AATGGATTTTACTACCTCGGCCGTGGAGATGAAGTCCGTTGCGCTTTCTGTAAAGTGGAG 320855 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| | |||| ||||||||| ||||| || || |||||| | |||||||| ||| Sbjct 320854 ATTATGAGGTGGGTGGAGGGCGATGACCCTGCGAAGGACCATCAGCGTTGGGCGCCACAG 320795 Query 103688 TGTCCGTTCCTG----aaaaaaaCGGCTGCTGGCGC-GCTGCCCGCCGGCCTTGCGATGG 103742 || || || || || ||||| | ||| || || | | | || | || Sbjct 320794 TGCCCATTTGTGCGCAAATTGAACGG-TACTGCAGCAGCAG-ACACGGGTAGTTCG---- 320741 Query 103743 ACGGGCAGGACGAGTGCGGCGTGAGCG-CGCTGCCGTCCACCAACGC-CTGCGTGCGCAT 103800 || ||||||||||| || | ||| |||| || ||| | | | | || ||| || Sbjct 320740 --GGCCAGGACGAGTGTGGTGCCCGCGCCGCT-CCCTCCGGTACCTCTCCGC-CGCGTAT 320685 Query 103801 GCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGA 103860 | |||| |||| |||||| || | || || || ||| || | ||| | |||||| || Sbjct 320684 GGCCGGTCCCGTGCACCCACGATATGCATCTGAAGCCGCACGACTACGCAGTTTTAAAGA 320625 Query 103861 TTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACAC 103920 ||||| || | || ||| ||||| || | | ||||| || || || | ||||| Sbjct 320624 CTGGCCACGATGCATGCGACAAAAACCTGAAGAACTCGCCGAGGCTGGCTT-TTTTACAC 320566 Query 103921 CGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCA 103980 || || | ||||| || || || || || ||||| ||||| |||| ||||||||| | Sbjct 320565 TGGTCAGGGAGACAAAACCAAGTGTTTTTATTGCGATGGTGGATTAAAAGATTGGGAGAA 320506 Query 103981 CGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACT 104040 | |||| | || ||| |||||||||| | ||| ||||||||| ||||||| | | Sbjct 320505 CCATGACGTACCCTGGGAACAACACGCAAGGTGGTTTGACCGTTGCGCCTACGTGCAATT 320446 Query 104041 TGTCAAGGGCCACGATTATGTACAAAAGGT 104070 || |||| | | || || || |||||||| Sbjct 320445 GGTGAAGGTCGA-GAATACGTTCAAAAGGT 320417 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/84 (83%), Gaps = 6/84 (7%) Strand=Plus/Minus Query 104291 AACGTGTGTTTTGTGCCGTGCGGGCATGTGGTGGCGTGCGTCAAGTGCGCGTTTGCTTTG 104350 |||||||| || ||||||||||| || |||||||| |||| |||||||||| | || | Sbjct 320268 AACGTGTGCTTCGTGCCGTGCGGCCACGTGGTGGCTTGCGCCAAGTGCGCGCTGGC---G 320212 Query 104351 GCCGA---GTGCCCCATGTGCCGC 104371 ||||| |||||||||||||||| Sbjct 320211 GCCGACAAGTGCCCCATGTGCCGC 320188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398865152298844