Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq535 114 2e-20 seq1732 109 9e-19 >seq535 Length=1858795 Score = 114 bits (126), Expect = 2e-20 Identities = 171/236 (72%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | ||||| || || |||||| |||| ||| | || || || | || | Sbjct 56970 TGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAGCCATCA- 56913 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||||||| ||||| ||| ||||| || |||||||| || ||| Sbjct 56912 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 56853 Query 146151 CAAAGACTCATTTTTGCAGG-TAAACAATTAGATGATAATAGAACGTTAACAGATTATAA 146209 |||||| | || || ||||| || ||| | || ||| | || | | || ||||| Sbjct 56852 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 56793 Query 146210 TATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 ||| ||||||||||| || | |||||||| ||| | |||||||| || | |||| Sbjct 56792 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAAA 56738 Score = 114 bits (126), Expect = 2e-20 Identities = 171/236 (72%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | ||||| || || |||||| |||| ||| | || || || | || | Sbjct 1714018 TGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAGCCATCA- 1714075 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||||||| ||||| ||| ||||| || |||||||| || ||| Sbjct 1714076 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 1714135 Query 146151 CAAAGACTCATTTTTGCAGG-TAAACAATTAGATGATAATAGAACGTTAACAGATTATAA 146209 |||||| | || || ||||| || ||| | || ||| | || | | || ||||| Sbjct 1714136 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 1714195 Query 146210 TATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 ||| ||||||||||| || | |||||||| ||| | |||||||| || | |||| Sbjct 1714196 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAATGTAAA 1714250 >seq1732 Length=1186882 Score = 109 bits (120), Expect = 9e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| || || || ||||| ||||| |||| || || | || Sbjct 784553 TGCAGATTTTCGTAAAAACCTTGACGGGTAAAACTATTACGCTTGAAGTCGAGCCATCCG 784612 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| |||||| ||| ||||||||||||||| || ||||| | Sbjct 784613 ACACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAGATCAGC 784672 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || || ||||| || || || || || | || | | || || || | Sbjct 784673 AACGATTGATCTTCGCAGGAAAGCAGTTGGAAGACGGCCGCACACTGTCTGACTACAACA 784732 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| || ||||| Sbjct 784733 TTCAAAAAGAATCCACCCTCCAT 784755 Score = 109 bits (120), Expect = 9e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || || || ||||| |||| || || | | | Sbjct 784781 TGCAGATTTTCGTGAAAACTCTCACTGGTAAGACGATTACCCTTGAAGTTGAGCCTTCAG 784840 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | ||||| || |||||| ||| ||||| || ||||| || ||||| | Sbjct 784841 ACACTATCGAGAATGTTAAGGCTAAAATCCAAGACAAAGAGGGTATTCCCCCAGATCAGC 784900 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || || |||||||||||||| ||| | | || | |||||||||| | Sbjct 784901 AGCGATTGATCTTCGCTGGTAAACAATTAGAGGATGGTCGCACCCTCTCAGATTATAACA 784960 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||||||||| | || | ||||| ||| | |||| |||| Sbjct 784961 TTCAGAAAGAATCGACCCTTCACCTTGTATTGCGACTCCGAGGTGGTA 785008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786142854316320