Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1935 89.7 9e-13 seq1567 89.7 9e-13 seq291 89.7 9e-13 >seq1935 Length=217195 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 183005 CAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAA 183064 |||| ||||| || || |||||| || | || || ||| | ||| |||||||| | Sbjct 139706 CAGAGACACACGATGACCTGTGGAATTCAGCCCAGATTCAGCTTGTGAAGGAAGGAAAGA 139647 Query 183065 TGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGG 183124 ||||| | ||| | || ||||||||||| || ||||| ||||| ||||| ||| || | Sbjct 139646 TGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATCCTTGAGTGGACCCCAACACCTG 139587 Query 183125 AAGATGCTTTGA 183136 |||||||| ||| Sbjct 139586 AAGATGCTCTGA 139575 >seq1567 Length=349014 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 183005 CAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAA 183064 |||| ||||| || || |||||| || | || || ||| | ||| |||||||| | Sbjct 24970 CAGAGACACACGATGACCTGTGGAATTCAGCCCAGATTCAGCTTGTGAAGGAAGGAAAGA 25029 Query 183065 TGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGG 183124 ||||| | ||| | || ||||||||||| || ||||| ||||| ||||| ||| || | Sbjct 25030 TGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATCCTTGAGTGGACCCCAACACCTG 25089 Query 183125 AAGATGCTTTGA 183136 |||||||| ||| Sbjct 25090 AAGATGCTCTGA 25101 >seq291 Length=1704258 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 183005 CAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAA 183064 |||| ||||| || || |||||| || | || || ||| | ||| |||||||| | Sbjct 283659 CAGAGACACACGATGACCTGTGGAATTCAGCCCAGATTCAGCTTGTGAAGGAAGGAAAGA 283718 Query 183065 TGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGG 183124 ||||| | ||| | || ||||||||||| || ||||| ||||| ||||| ||| || | Sbjct 283719 TGCATGGCTTTCTGCGCATGTACTGGGCCAAGAAGATCCTTGAGTGGACCCCAACACCTG 283778 Query 183125 AAGATGCTTTGA 183136 |||||||| ||| Sbjct 283779 AAGATGCTCTGA 283790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903384142834560