Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1835 235 1e-56 seq1057 235 1e-56 >seq1835 Length=830947 Score = 235 bits (260), Expect = 1e-56 Identities = 442/645 (69%), Gaps = 11/645 (2%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||||| ||||||| || || | | ||| || ||||| |||||||| ||||||||| Sbjct 534235 CAATTATCTTCTTGTTTCCTCATTGCAATGAAAGATGACAGCATTGAAGGGATTTATGAT 534176 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | || ||| || |||||| ||||||||| ||||||| ||||| |||| || || Sbjct 534175 ACCCTAAAACAATGTGCTCTCATTTCTAAATCAGCTGGAGGGATTGGACTTCATGTCCAC 534116 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 |||| | || || || | | || || | || || | |||| ||| |||||| Sbjct 534115 TGTATTAGATCTAAGGGTACTTACATTGCTGGTACAAATGGCGTATCAAATGGTCTTGTT 534056 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGA 110747 |||||||||||||||| ||| | || || ||||| | ||||||||||| |||| Sbjct 534055 CCAATGTTAAGAGTCTACAATAATACAGCTCGCTATGTTGACCAAGGTGGTAACAAGAGA 533996 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 ||| | |||||||| ||| | ||||| |||||| | || ||||| ||||||||||| Sbjct 533995 CCTGGTGCTTTTGCTATTTATTTAGAACCATGGCATGCTGACATATTCGAATTCTTAGAT 533936 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 | |||||| || |||||| ||||| | || | |||||||| | ||| Sbjct 533935 TTGAAAAAAAATACTGGTAAAGAAGAAGTGCGAGCAAGAGAACTCTTTTATGCTTTATGG 533876 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCT 110927 || | || |||||||||||| | || || ||| | ||| | | ||||| || Sbjct 533875 ATACCTGACTTATTCATGAAAAGAGTGGAAACTAATCAAAACTGGAGTATCATGTGCCCC 533816 Query 110928 CATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAA 110987 ||| | |||||| |||||||| | ||| |||| ||||| | | || || ||| Sbjct 533815 CATGAATGTCCTGGACTATCTGACTGCTGGGGAGAAGAATTTGAGGCTTTGTATGAGAAA 533756 Query 110988 TATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAA--- 111044 ||||||| |||||| ||| |||||| | ||||| || ||| || ||| Sbjct 533755 TATGAAAGTGAAGGCCGTTTTGTGAAACAAGTCAGAGCTC---AAATTTTGTGGAAAGCT 533699 Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAA 111103 || ||||| |||| |||||||| ||||| || || || | || || || |||| || Sbjct 533698 ATAATTGAAGCACAGGTTGAAACCGGAACACCATACATGCTCTACAAGGATTCAT-GCAA 533640 Query 111104 TCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 | ||| |||||||| ||||| || || ||||| | ||||| Sbjct 533639 CAGAAAAAGTAATCAAAAAAATTTGGGCACCATTAAATGCAGTAA 533595 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| || ||| ||| |||| || || || ||||||||||| | ||| ||| Sbjct 533472 AAGTTACTAAAACTATAACACAAAATCTGAACAAAATTATTGATGTGAATTACTACCCAG 533413 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 | | | | || ||| | || |||| | || ||||| ||||| ||||| |||||||| | Sbjct 533412 TCCCAGAGGCTAAAAAATCAAATATGAGACACAGACCCATTGGAATTGGAGTACAAGGCT 533353 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATT--CTT 112753 ||||||||| ||| | ||||||| || || | ||| ||| ||| |||| || Sbjct 533352 TAGCTGATGCCTTTGTATTGATGCGCATACCATATGAAAGTGAAGCTGC--AATTAAATT 533295 Query 112754 AAATGAAAAGATTTTCGAAACAATCTATT 112782 |||| | |||| |||||||| || |||| Sbjct 533294 AAATCAGCAGATATTCGAAACTATTTATT 533266 >seq1057 Length=1009321 Score = 235 bits (260), Expect = 1e-56 Identities = 442/645 (69%), Gaps = 11/645 (2%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||||| ||||||| || || | | ||| || ||||| |||||||| ||||||||| Sbjct 686420 CAATTATCTTCTTGTTTCCTCATTGCAATGAAAGATGACAGCATTGAAGGGATTTATGAT 686479 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | || ||| || |||||| ||||||||| ||||||| ||||| |||| || || Sbjct 686480 ACCCTAAAACAATGTGCTCTCATTTCTAAATCAGCTGGAGGGATTGGACTTCATGTCCAC 686539 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 |||| | || || || | | || || | || || | |||| ||| |||||| Sbjct 686540 TGTATTAGATCTAAGGGTACTTACATTGCTGGTACAAATGGCGTATCAAATGGTCTTGTT 686599 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGA 110747 |||||||||||||||| ||| | || || ||||| | ||||||||||| |||| Sbjct 686600 CCAATGTTAAGAGTCTACAATAATACAGCTCGCTATGTTGACCAAGGTGGTAACAAGAGA 686659 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 ||| | |||||||| ||| | ||||| |||||| | || ||||| ||||||||||| Sbjct 686660 CCTGGTGCTTTTGCTATTTATTTAGAACCATGGCATGCTGACATATTCGAATTCTTAGAT 686719 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 | |||||| || |||||| ||||| | || | |||||||| | ||| Sbjct 686720 TTGAAAAAAAATACTGGTAAAGAAGAAGTGCGAGCAAGAGAACTCTTTTATGCTTTATGG 686779 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCT 110927 || | || |||||||||||| | || || ||| | ||| | | ||||| || Sbjct 686780 ATACCTGACTTATTCATGAAAAGAGTGGAAACTAATCAAAACTGGAGTATCATGTGCCCC 686839 Query 110928 CATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAA 110987 ||| | |||||| |||||||| | ||| |||| ||||| | | || || ||| Sbjct 686840 CATGAATGTCCTGGACTATCTGACTGCTGGGGAGAAGAATTTGAGGCTTTGTATGAGAAA 686899 Query 110988 TATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAA--- 111044 ||||||| |||||| ||| |||||| | ||||| || ||| || ||| Sbjct 686900 TATGAAAGTGAAGGCCGTTTTGTGAAACAAGTCAGAGCTC---AAATTTTGTGGAAAGCT 686956 Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAA 111103 || ||||| |||| |||||||| ||||| || || || | || || || |||| || Sbjct 686957 ATAATTGAAGCACAGGTTGAAACCGGAACACCATACATGCTCTACAAGGATTCAT-GCAA 687015 Query 111104 TCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 | ||| |||||||| ||||| || || ||||| | ||||| Sbjct 687016 CAGAAAAAGTAATCAAAAAAATTTGGGCACCATTAAATGCAGTAA 687060 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| || ||| ||| |||| || || || ||||||||||| | ||| ||| Sbjct 687183 AAGTTACTAAAACTATAACACAAAATCTGAACAAAATTATTGATGTGAATTACTACCCAG 687242 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 | | | | || ||| | || |||| | || ||||| ||||| ||||| |||||||| | Sbjct 687243 TCCCAGAGGCTAAAAAATCAAATATGAGACACAGACCCATTGGAATTGGAGTACAAGGCT 687302 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATT--CTT 112753 ||||||||| ||| | ||||||| || || | ||| ||| ||| |||| || Sbjct 687303 TAGCTGATGCCTTTGTATTGATGCGCATACCATATGAAAGTGAAGCTGC--AATTAAATT 687360 Query 112754 AAATGAAAAGATTTTCGAAACAATCTATT 112782 |||| | |||| |||||||| || |||| Sbjct 687361 AAATCAGCAGATATTCGAAACTATTTATT 687389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186776366330556