Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1046 120 2e-22 seq535 111 1e-19 seq1732 105 4e-18 >seq1046 Length=465179 Score = 120 bits (132), Expect = 2e-22 Identities = 182/254 (72%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 33502 CATATACAAA--TAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCT 33559 |||| ||||| | || || | ||| |||||||| | | |||||| || || ||| | Sbjct 190262 CATAGACAAAGTTGAAGTCTT-ACCTCCTCTCAACCTGAGCACCAAGTGGAGGGTGGATT 190204 Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 | ||||| ||||||||||| ||||| || || | || ||||| ||||| || || || | Sbjct 190203 CCTTTTGGATGTTGTAATCAGAGAGAGTACGGCCATCTTCCAACTGTTTACCAGCGAAGA 190144 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | ||| ||||| ||| | || | || |||||||| || || || | |||| Sbjct 190143 TAAGACGTTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTT-TGCCTTCACATTT 190085 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||| | |||||| || | ||||| |||||||| || | |||||||| Sbjct 190084 TCGATGGTGTCTGAGGCTTCCACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACG 190025 Query 33739 AAGATCTGCATAGT 33752 ||||||||||| || Sbjct 190024 AAGATCTGCATTGT 190011 >seq535 Length=1858795 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || ||||| || |||||| ||| || || |||||||| ||||| Sbjct 57424 ACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 57483 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || |||| || || ||||| || |||| || ||||| || | || Sbjct 57484 GAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGG 57543 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| | || || | || | ||||| | || | Sbjct 57544 GATTCCCTCTTTGTCTTGGATTTT-AGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAA 57602 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || ||||| |||||||| |||||| Sbjct 57603 CTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCATA 57652 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || ||||| || |||||| ||| || || |||||||| ||||| Sbjct 1713564 ACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 1713505 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || |||| || || ||||| || |||| || ||||| || | || Sbjct 1713504 GAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGG 1713445 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| | || || | || | ||||| | || | Sbjct 1713444 GATTCCCTCTTTGTCTTGGATTTT-AGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAA 1713386 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || ||||| |||||||| |||||| Sbjct 1713385 CTTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCATA 1713336 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || ||||| || |||||| ||| || || |||||||| ||||| Sbjct 57878 ACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 57937 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || |||| || || ||||| || |||| || ||||| || | || Sbjct 57938 GAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGG 57997 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA--TTC 33698 | || |||||||| |||||| ||| | || || | ||||| ||| || Sbjct 57998 AATTCCCTCTTTGTCCTGAATTTTGGCTTTGA--ATTTTCGATTGTGTC---TGAAGGTC 58052 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || ||||| || | || || |||||||| |||||| Sbjct 58053 GACCTCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATTTGCATA 58104 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || ||||| || |||||| ||| || || |||||||| ||||| Sbjct 1713110 ACCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 1713051 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || |||| || || ||||| || |||| || ||||| || | || Sbjct 1713050 GAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGG 1712991 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA--TTC 33698 | || |||||||| |||||| ||| | || || | ||||| ||| || Sbjct 1712990 AATTCCCTCTTTGTCCTGAATTTTGGCTTTGA--ATTTTCGATTGTGTC---TGAAGGTC 1712936 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || ||||| || | || || |||||||| |||||| Sbjct 1712935 GACCTCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATTTGCATA 1712884 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||| ||||| | ||| | || ||| || || || || || || |||||||| |||| Sbjct 56972 ACCGCCTCTTAGACGAAGAACTAAAATGCAGTGTAGATTCCTTCTGAATGTTGTAGTCGG 57031 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||||||| | || |||| || || ||||| || |||| || ||||| || | | Sbjct 57032 AGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTG 57091 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| |||||| | || |||| || | ||||| | ||| Sbjct 57092 GGATTCCCTCTTTGTCCTGAATTTT-GGCTTTGACATTTTCGATTGTGTCTGAAGGTTCG 57150 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || ||||| || | || || |||||||| |||||| Sbjct 57151 ACCTCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATTTGCATA 57201 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||| ||||| | ||| | || ||| || || || || || || |||||||| |||| Sbjct 1714016 ACCGCCTCTTAGACGAAGAACTAAAATGCAGTGTAGATTCCTTCTGAATGTTGTAGTCGG 1713957 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||||||| | || |||| || || ||||| || |||| || ||||| || | | Sbjct 1713956 AGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTG 1713897 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| |||||| | || |||| || | ||||| | ||| Sbjct 1713896 GGATTCCCTCTTTGTCCTGAATTTT-GGCTTTGACATTTTCGATTGTGTCTGAAGGTTCG 1713838 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || ||||| || | || || |||||||| |||||| Sbjct 1713837 ACCTCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATTTGCATA 1713787 >seq1732 Length=1186882 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | ||| | |||||| ||| ||||| || |||||||| || || Sbjct 785235 ACCACCTCGCAGACGGAGCACAAGATGTAGTGTGGATTCTTTCTGGATGTTGTAGTCAGA 785176 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||| || || || ||||| || | ||||||||| ||| | || Sbjct 785175 AAGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG 785116 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | | |||| || | ||||| | ||| | Sbjct 785115 AATGCCTTCTTTGTCTTGGATCTT-GGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAA 785057 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || ||||| ||||||||| Sbjct 785056 CTTCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACAAATATCTGCATA 785007 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | ||| | ||| || || ||||| || ||||| ||||| || Sbjct 785463 ACCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCTGA 785404 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || ||||| || | ||||||||| || | || Sbjct 785403 CAAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGG 785344 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| |||||| | | |||| || | ||||| | ||| | Sbjct 785343 GATACCCTCTTTGTCCTGAATTTT-GGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAA 785285 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || ||||| || || ||||| ||||| ||||||||| Sbjct 785284 CCTCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCATA 785235 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || ||||| ||||| ||||| ||||| | || || |||||||| || || || Sbjct 784970 TCTTTCTGAATGTTATAATCTGAGAGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAG 784911 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| |||||||||||| | || | ||| |||||||| ||||| | | ||||| Sbjct 784910 ATCAATCGCTGCTGATCTGGGGGAATACCCTCTTTGTCTTGGATTTT-AGCCTTAACATT 784852 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | || || |||| || ||||| ||||| || | ||||| || Sbjct 784851 CTCGATAGTGTCTGAAGGCTCAACTTCAAGGGTAATCGTCTTACCAGTGAGAGTTTTCAC 784792 Query 33738 AAAGATCTGCATA 33750 || ||||||||| Sbjct 784791 GAAAATCTGCATA 784779 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | ||| | ||| || ||| |||||||| || ||||| || || Sbjct 785690 ACCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGA 785631 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| || || |||||||||||||| || | ||||||||| || | || Sbjct 785630 AAGAGTGCGTCCGTCTTCTAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTC-AGGGG 785572 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 785571 GATGCCTTCCTTGTC 785557 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | ||| || || |||||| || |||||||| ||||| Sbjct 786144 ACCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGA 786085 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| |||| ||| || || || ||||| | ||||||||| || | || Sbjct 786084 AAGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTC-AGGGG 786026 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 786025 GATGCCTTCCTTGTC 786011 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| || ||| | ||| | ||| || ||| ||||| || |||||||| || || Sbjct 786824 ACCTCCTCGCAGACGGAGCACAAGATGAAGTGTGGATTCTTTCTGGATGTTGTAGTCAGA 786765 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| ||||| |||||||||||||| || | ||||||||| || | || Sbjct 786764 AAGAGTGCGTCCGTCTTCCAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTC-AGGGG 786706 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 786705 GATGCCTTCCTTGTC 786691 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| | |||||| || || || ||||| || |||||||| ||||| Sbjct 787052 ACCACCTCGGAGACGGAGCACCAAGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCGGA 786993 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||| || || || || || || | ||||||||| || | || Sbjct 786992 CAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGG 786933 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||||| ||||| || || |||| ||| ||| ||||| | ||| | Sbjct 786932 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTTTCAATCGTGTCAGAAGGTTCAA 786874 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| || || || ||||| || |||||||||||| Sbjct 786873 CCTCAAGAGTGATGGTTTTGCCAGTCAAAGTTTTGACGAAGATCTGCATA 786824 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | ||| | ||| || ||| |||||||| || ||||| ||||| Sbjct 787279 ACCACCTCGCAGACGGAGCACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCGGA 787220 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || |||||||| || ||||| || | ||||||||| ||| | || Sbjct 787219 CAAAGTGCGACCATCCTCTAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 787160 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| || || || || || ||| | | | ||| |||||| || ||| | Sbjct 787159 -ATACCCTCCTTATCTTGGATCTTGGCTTTGA-CGTTTTCAATGGTGTCAGATGGTTCAA 787102 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 787101 CCTCCAGAGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCATA 787052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328694401432320