Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1843 185 8e-42 seq535 120 3e-22 seq1046 104 2e-17 seq1732 89.7 5e-13 >seq1843 Length=1107702 Score = 185 bits (204), Expect = 8e-42 Identities = 363/532 (68%), Gaps = 5/532 (1%) Strand=Plus/Minus Query 59892 GAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGAATG 59951 |||| |||||||| ||| || | ||| || || |||| ||| || ||||| ||||| Sbjct 492144 GAACAAGCCCTTC--AAGCAGACTTCAGGA-AAGGTTGTTGGCGCCTACTTTGTTGAATG 492088 Query 59952 GGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGCATAT 60011 |||||| || || || || || || || || || ||||||| || ||||| | ||| | Sbjct 492087 GGGTGTCTACCCAAGGAAGTTCCCCGTTGACCGTGTGCCCATCCCCAATCTTACTCATCT 492028 Query 60012 TCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAACCAT 60071 || || || || || || || || || || || || |||||||||||| | || || Sbjct 492027 GCTGTATGGTTTCATCCCAATCTGTGGAGGAGATGGCATCAACGACAGTTTGAAGGAGAT 491968 Query 60072 AACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAGTATC 60131 || |||||| |||| || ||| |||| || || | || || || || ||||| Sbjct 491967 CGAAGGCAGTTTCCAAGCTCTGCAGAGATCATGCAGCGGCAGGGAAGATTTCAAGGTATC 491908 Query 60132 AATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGAACGA 60191 || |||||||| ||||| || |||| ||||| || || | | | |||||||| Sbjct 491907 TATCCACGATCCTTGGGCTGCACTCCAAAAACCACAGAAGGGTTTGTCATCCTGGAACGA 491848 Query 60192 ACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACATCAA 60251 || ||||| ||||| ||||| ||||| ||| |||| || | || || | || Sbjct 491847 GCCTTACAAGGGTAACTTCGGCCAATTGATGATGTTGAAACAAGCGAGACCAGACCTGAA 491788 Query 60252 AGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCAC-GATA 60310 | ||||| || | || || ||||| || | || |||||||| | |||||| || Sbjct 491787 GATCTTGCCTTCTGTTGGTGGATGGACCCTGGCTGACCCGTTCTTCT-TTTTCACTGACG 491729 Query 60311 CGGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAATTTT 60370 | || || | || || | ||| ||| ||| || || | || ||||| || | Sbjct 491728 AAGTGAAGAGACACCGCTTCGTTGCTTCAGTCAAGGACTTCCTCGAAACCTGGAAGTTCT 491669 Query 60371 TCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCCAATCC 60422 |||| ||||| ||||| || ||||| || || || || ||||| ||||| || Sbjct 491668 TCGATGGTGTTGACATTGATTGGGAATTCCCTGGTGGTAAAGGAGCCAACCC 491617 >seq535 Length=1858795 Score = 120 bits (132), Expect = 3e-22 Identities = 169/231 (73%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || |||||| | || || | ||||| || |||| | Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGA-GCCATC 56914 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | |||||| ||||||| || |||||||| || || || || || Sbjct 56913 AGACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCA 56854 Query 25294 GCAAAGACTCATTTACGGCGGCAAA-CAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||||| | || | || ||| || ||||| ||||||| | | | ||| || | Sbjct 56853 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATA 56794 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||||| || | |||||||| ||||| || ||||| |||| Sbjct 56793 ATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAA 56744 Score = 120 bits (132), Expect = 3e-22 Identities = 169/231 (73%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || |||||| | || || | ||||| || |||| | Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGA-GCCATC 1714074 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | |||||| ||||||| || |||||||| || || || || || Sbjct 1714075 AGACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCA 1714134 Query 25294 GCAAAGACTCATTTACGGCGGCAAA-CAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||||| | || | || ||| || ||||| ||||||| | | | ||| || | Sbjct 1714135 ACAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATA 1714194 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||||| || | |||||||| ||||| || ||||| |||| Sbjct 1714195 ATATTCAAAAAGAATCTACACTGCATTTAGTTTTAAG-TTAAGAGGTGGAA 1714244 >seq1046 Length=465179 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || |||||||| | || || ||| | ||||| |||| || |||||| Sbjct 190014 ATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTGGAAGCCTCA 190073 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||| || || |||||||| || || || || ||| Sbjct 190074 GACACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAG 190133 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | || || ||||| | ||||||| | | | || |||||||| Sbjct 190134 CAACGTCTTATCTTCGCTGGTAAACAGTTGGAAGATGGCCGTACTCTCTCTGATTACAAC 190193 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || ||||| ||||||||| | || || ||| | || ||||||||||| || Sbjct 190194 ATCCAAAAGGAATCCACCCTCCACTTGGTGCTCAGGTTGAGAGGAGGTAA 190243 >seq1732 Length=1186882 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || |||||||| || || || ||| | || ||| | |||||||| || Sbjct 784548 CACCATGCAGATTTTCGTAAAAACCTTGACGGGTAAAACTATTACGCTTGAAGTCGA-GC 784606 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || | || || || || | || ||| |||||| |||||||| || || || || | Sbjct 784607 CATCCGACACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAG 784666 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGA 25347 |||||||| || | || | || || || || | ||||| | | | |||| | | Sbjct 784667 ATCAGCAACGATTGATCTTCGCAGGAAAGCAGTTGGAAGACGGCCGCACACTGTCTG--A 784724 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCAT 25378 ||||| |||||||||||||||||| | ||| Sbjct 784725 CTACAACATTCAAAAAGAATCCACCCTCCAT 784755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445081069422720