Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1732 114 1e-20 seq1046 111 1e-19 seq535 102 7e-17 >seq1732 Length=1186882 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| ||| || || | || |||| |||||| || || || Sbjct 787015 TCTTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAG 786956 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | || | || ||||||||| |||||| ||||| | || Sbjct 786955 ATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 786896 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | ||| ||||| | ||||| ||||| || ||||||||||| || Sbjct 786895 TCAATCGTGTCAGAAGGTTCAACCTCAAGAGTGATGGTTTTGCCAGTCAAAGTTTTGACG 786836 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 786835 AAGATCTGCAT 786825 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||||||||| || | || || || |||| |||| |||||| || || || Sbjct 784742 TCTTTTTGAATGTTGTAGTCAGACAGTGTGCGGCCGTCTTCCAACTGCTTTCCTGCGAAG 784683 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| || ||||| || | ||||| || || ||| | ||| ||| || || | | | Sbjct 784682 ATCAATCGTTGCTGATCTGGAGGAATGC-CTTCTTTATCTTGAATTTTAGCTTTAACATT 784624 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| | || || || | ||| || |||||||||||||| ||||| || Sbjct 784623 TTCAATGGTGTCGGATGGCTCGACTTCAAGCGTAATAGTTTTACCCGTCAAGGTTTTTAC 784564 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 784563 GAAAATCTGCAT 784552 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||| ||||| | ||| ||||| | || |||| || || || ||||| Sbjct 785426 TCTTTCTGGATGTTATAATCTGACAAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAG 785367 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | ||||||||||| | || | | ||| |||||| ||| ||| || || | | | Sbjct 785366 ATAAGACGCTGCTGGTCAGGGGGGATACCCTCTTTGTCC-TGAATTTTGGCCTTTACATT 785308 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| ||||| | ||||| || ||||| ||||||||||| || Sbjct 785307 TTCAATTGTGTCAGAAGGTTCAACCTCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGAC 785248 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 785247 AAATATCTGCAT 785236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | | || || | || |||| |||||| || ||||| Sbjct 785198 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAG 785139 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||||| || || ||||| |||||| ||| | | || Sbjct 785138 ATAAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTT 785079 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| || || | ||||| ||||| || || | ||| || ||| Sbjct 785078 TCAATTGTGTCAGAAGGTTCAACTTCGAGAGTGATGGTTTTGCCAGTAAGAGTCTTGACA 785019 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 785018 AATATCTGCAT 785008 >seq1046 Length=465179 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 ||||| | |||||| || | || |||||||| ||||||||||| | | || || Sbjct 190231 AACCTGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAGAGAGTACGG 190172 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || |||| ||| ||||| || || || | || |||||||| | || | | ||| Sbjct 190171 CCATCTTCCAACTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATTCCCTCT 190112 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 |||||| ||||||| ||||| | || | | ||||| | ||||||||| | ||| Sbjct 190111 TTGTCCTGGATCTTTGCCTTCACATTTTCGATGGTGTCTGAGGCTTCCACCTCGAGGGTG 190052 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || ||||||||||| | ||||| || || ||||||||| Sbjct 190051 ATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 190013 >seq535 Length=1858795 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 57425 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 57484 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || |||| || |||||||| | || Sbjct 57485 AGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 57544 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| ||||| ||| ||| || || | || | | ||||| | || || Sbjct 57545 ATTCCCTCTTTGTCTTGGAT-TTTAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAAC 57603 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 57604 TTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 57651 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 1713563 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1713504 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || |||| || |||||||| | || Sbjct 1713503 AGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 1713444 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| ||||| ||| ||| || || | || | | ||||| | || || Sbjct 1713443 ATTCCCTCTTTGTCTTGGAT-TTTAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAAC 1713385 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 1713384 TTCCAGTGTGATAGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 1713337 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 57879 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 57938 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || |||| || |||||||| | ||| Sbjct 57939 AGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGA 57998 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| |||||| ||| ||| |||| | || | | ||||| | || ||| Sbjct 57999 ATTCCCTCTTTGTCC-TGAATTTTGGCTTTGAATTTTCGATTGTGTCTGAAG-GTCGACC 58056 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| |||| || || ||||| || ||||| Sbjct 58057 TCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATTTGCAT 58103 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 1713109 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1713050 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || |||| || |||||||| | ||| Sbjct 1713049 AGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGA 1712990 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| |||||| ||| ||| |||| | || | | ||||| | || ||| Sbjct 1712989 ATTCCCTCTTTGTCC-TGAATTTTGGCTTTGAATTTTCGATTGTGTCTGAAG-GTCGACC 1712932 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| |||| || || ||||| || ||||| Sbjct 1712931 TCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATTTGCAT 1712885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 57653 CCACCACGCAGACGCAATACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 57712 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || | |||||||||||| || || |||| || |||||||| | || Sbjct 57713 AGAGTGCGGCCATC-TTCAGCTGCTTACCAGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 57771 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || || | | || | | ||||| | ||| || Sbjct 57772 A-TCCCTCTTTGTCC-TGAATTTTGGCTTTGACATTTTCGATTGTGTCTGAAGGTTCGAC 57829 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || ||||| |||| ||| || ||||| || ||||| Sbjct 57830 CTCGAGTGTGATGGTCTTACCGGTCAGAGTCTTGACAAAGATTTGCAT 57877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 1713335 CCACCACGCAGACGCAATACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 1713276 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || | |||||||||||| || || |||| || |||||||| | || Sbjct 1713275 AGAGTGCGGCCATC-TTCAGCTGCTTACCAGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 1713217 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || || | | || | | ||||| | ||| || Sbjct 1713216 A-TCCCTCTTTGTCC-TGAATTTTGGCTTTGACATTTTCGATTGTGTCTGAAGGTTCGAC 1713159 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || ||||| |||| ||| || ||||| || ||||| Sbjct 1713158 CTCGAGTGTGATGGTCTTACCGGTCAGAGTCTTGACAAAGATTTGCAT 1713111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| | || || | || |||||||||||||| || || Sbjct 57010 TCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAG 57069 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| || |||||||| | || | | ||| |||||| ||| ||| || || | | | Sbjct 57070 ATCAGTCGTTGCTGGTCAGGTGGGATTCCCTCTTTGTCC-TGAATTTTGGCTTTGACATT 57128 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| ||||| | ||||| || ||||| |||| || || || Sbjct 57129 TTCGATTGTGTCTGAAGGTTCGACCTCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGAC 57188 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 57189 AAAGATTTGCAT 57200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| | || || | || |||||||||||||| || || Sbjct 1713978 TCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAG 1713919 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| || |||||||| | || | | ||| |||||| ||| ||| || || | | | Sbjct 1713918 ATCAGTCGTTGCTGGTCAGGTGGGATTCCCTCTTTGTCC-TGAATTTTGGCTTTGACATT 1713860 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| ||||| | ||||| || ||||| |||| || || || Sbjct 1713859 TTCGATTGTGTCTGAAGGTTCGACCTCGAGTGTGATGGTCTTACCGGTCAGGGTCTTGAC 1713800 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 1713799 AAAGATTTGCAT 1713788 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 58105 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 58164 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || |||| || |||||||| | || Sbjct 58165 AGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 58224 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || || | | || | | ||||| | ||| || Sbjct 58225 ATTCCCTCTTTGTCC-TGAATTTTGGCTTTGACATTTTCGATTGTGTCTGAAG-TTCGAC 58282 Query 35689 CTCCACCGTGATCGTTTTACCCGTCA 35714 ||| | ||||| || ||||| |||| Sbjct 58283 CTCGAGTGTGATGGTCTTACCGGTCA 58308 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| ||||||||||| |||| Sbjct 1712883 CCACCACGCAGACGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1712824 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || |||| || |||||||| | || Sbjct 1712823 AGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG 1712764 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || || | | || | | ||||| | ||| || Sbjct 1712763 ATTCCCTCTTTGTCC-TGAATTTTGGCTTTGACATTTTCGATTGTGTCTGAAG-TTCGAC 1712706 Query 35689 CTCCACCGTGATCGTTTTACCCGTCA 35714 ||| | ||||| || ||||| |||| Sbjct 1712705 CTCGAGTGTGATGGTCTTACCGGTCA 1712680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450780098731680