Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1835 134 2e-26 seq1057 134 2e-26 >seq1835 Length=830947 Score = 134 bits (148), Expect = 2e-26 Identities = 492/750 (66%), Gaps = 28/750 (4%) Strand=Plus/Plus Query 110680 AAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTC 110739 ||||||||||| | | ||| |||||||||| | |||| |||||||||| |||| Sbjct 532974 AAACTCACCTGACAAAACACGTCTTTGGTAGATGTTAGATGTGAATGGTTCAAAAGATTC 533033 Query 110740 ATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 ||| || || || ||||| || ||||| || || |||||||| || | |||||| || Sbjct 533034 ATTGTTTCCTAATATTTGGGCAGTGGAAGCAGTAGGCATTGGAGCTAACAAAAGCGAATT 533093 Query 110800 ACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGTCG-TAGTTGAGCTT 110856 | ||||| | | ||| || || || || ||||||| || | || | Sbjct 533094 TCTGAGACCATGTT--TTGCAATCTTCTCTTTCAGGGATGCCCAGTCCATAAATCAG-TA 533150 Query 110857 GGTTTCACCTTC--CCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCA 110914 || |||||| ||||||||| |||| | | || || || ||| ||| ||| Sbjct 533151 GG---CACCTTGTTCCACATGTCGTACTGTAATATGCCCTGACTAGCAGGACTACCTTCA 533207 Query 110915 AAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGA 110974 | || || || || | ||||| |||||||| || || || || | | | | Sbjct 533208 TATGTCTCGTACACTCCATACTTCTCAGCTAATTCACAACTTGCTTCTAGTGCACCATAA 533267 Query 110975 TACATGGTTTCAAAGATACGAGCATTCA-TCTCCTTG--GCTTCATCTGAATCAAATGCG 111031 || || ||||| || || | ||| | | | ||| |||||| | ||| ||| | Sbjct 533268 TAAATAGTTTCGAATATCTGCTGATTTAATTTAATTGCAGCTTCACTT---TCATATG-G 533323 Query 111032 TAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 || ||| ||| | ||| |||| || | ||||| || || | ||||| |||||||| Sbjct 533324 TATGCGCATCAATACAAAGGCATCAGCTAAGCCTTGTACTCCAATTCCAATGGGTCTGTG 533383 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 || |||||| || ||| || ||| || || || |||| ||||| | | || Sbjct 533384 TCTCATATTTGATTTTTTAGCC-TCTGGGACTGGGTAGTAATTCACATCAATAATTTTGT 533442 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209 | ||||||| || | | | || || | ||| | | ||| |||| | || || Sbjct 533443 TCAGATTTTGTGTTATAGTTTTAGTAACTTCTTTTAACTTT--ATAA--AGTTGTACGTT 533498 Query 111210 TCTCT-TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 | | ||||| ||| || | | || |||||||| ||||| ||||| || ||| Sbjct 533499 TTGTTATCATTTACAAACATATTCAATGCAATTGATGCTAAATTACAAACTGCAACTTCA 533558 Query 111269 TCCTTATCT-GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327 || | || || || || | |||||| || || | ||| | ||||| || ||||| Sbjct 533559 TC-TGATGAAGTATATTCAACAATTTCAGTGCAAAGGTTACTGCATTTAATGGTGCCCAA 533617 Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387 ||| ||||| ||||| || ||||||| | |||||||||||||||||| || || || || Sbjct 533618 ATTTTTTTGATTACTTTTTCTGTTGCATGAATCCTTGTAGAGCATGTATGGTGTTCCGGT 533677 Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 || ||||| || | ||||| ||||| Sbjct 533678 TTCAACCTGTGCTTCAATTATAGCTTTCCA 533707 >seq1057 Length=1009321 Score = 134 bits (148), Expect = 2e-26 Identities = 492/750 (66%), Gaps = 28/750 (4%) Strand=Plus/Minus Query 110680 AAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTC 110739 ||||||||||| | | ||| |||||||||| | |||| |||||||||| |||| Sbjct 687681 AAACTCACCTGACAAAACACGTCTTTGGTAGATGTTAGATGTGAATGGTTCAAAAGATTC 687622 Query 110740 ATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 ||| || || || ||||| || ||||| || || |||||||| || | |||||| || Sbjct 687621 ATTGTTTCCTAATATTTGGGCAGTGGAAGCAGTAGGCATTGGAGCTAACAAAAGCGAATT 687562 Query 110800 ACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGTCG-TAGTTGAGCTT 110856 | ||||| | | ||| || || || || ||||||| || | || | Sbjct 687561 TCTGAGACCATGTT--TTGCAATCTTCTCTTTCAGGGATGCCCAGTCCATAAATCAG-TA 687505 Query 110857 GGTTTCACCTTC--CCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCA 110914 || |||||| ||||||||| |||| | | || || || ||| ||| ||| Sbjct 687504 GG---CACCTTGTTCCACATGTCGTACTGTAATATGCCCTGACTAGCAGGACTACCTTCA 687448 Query 110915 AAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGA 110974 | || || || || | ||||| |||||||| || || || || | | | | Sbjct 687447 TATGTCTCGTACACTCCATACTTCTCAGCTAATTCACAACTTGCTTCTAGTGCACCATAA 687388 Query 110975 TACATGGTTTCAAAGATACGAGCATTCA-TCTCCTTG--GCTTCATCTGAATCAAATGCG 111031 || || ||||| || || | ||| | | | ||| |||||| | ||| ||| | Sbjct 687387 TAAATAGTTTCGAATATCTGCTGATTTAATTTAATTGCAGCTTCACTT---TCATATG-G 687332 Query 111032 TAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 || ||| ||| | ||| |||| || | ||||| || || | ||||| |||||||| Sbjct 687331 TATGCGCATCAATACAAAGGCATCAGCTAAGCCTTGTACTCCAATTCCAATGGGTCTGTG 687272 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 || |||||| || ||| || ||| || || || |||| ||||| | | || Sbjct 687271 TCTCATATTTGATTTTTTAGCC-TCTGGGACTGGGTAGTAATTCACATCAATAATTTTGT 687213 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 111209 | ||||||| || | | | || || | ||| | | ||| |||| | || || Sbjct 687212 TCAGATTTTGTGTTATAGTTTTAGTAACTTCTTTTAACTTT--ATAA--AGTTGTACGTT 687157 Query 111210 TCTCT-TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 | | ||||| ||| || | | || |||||||| ||||| ||||| || ||| Sbjct 687156 TTGTTATCATTTACAAACATATTCAATGCAATTGATGCTAAATTACAAACTGCAACTTCA 687097 Query 111269 TCCTTATCT-GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327 || | || || || || | |||||| || || | ||| | ||||| || ||||| Sbjct 687096 TC-TGATGAAGTATATTCAACAATTTCAGTGCAAAGGTTACTGCATTTAATGGTGCCCAA 687038 Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387 ||| ||||| ||||| || ||||||| | |||||||||||||||||| || || || || Sbjct 687037 ATTTTTTTGATTACTTTTTCTGTTGCATGAATCCTTGTAGAGCATGTATGGTGTTCCGGT 686978 Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 || ||||| || | ||||| ||||| Sbjct 686977 TTCAACCTGTGCTTCAATTATAGCTTTCCA 686948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628013190441600