Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1835 82.4 9e-11 seq1057 82.4 9e-11 >seq1835 Length=830947 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 ||||| ||| || || | || ||||| || | |||||| || | ||||| | | Sbjct 533505 TCATTTACAAACATATTCAATGCAATTGATGCTAAATTACAAACTGCAACTTCATC-TGA 533563 Query 118749 TCA-GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 | | || || || | |||||| ||||| | ||| | |||||||||||||| || || Sbjct 533564 TGAAGTATATTCAACAATTTCAGTGCAAAGGTTACTGCATTTAATGGTGCCCAAATTTTT 533623 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 |||||| ||| |||| || | ||||||||| ||||||||||| || || || || Sbjct 533624 TTGATTACTTTTTCTGTTGCATGAATCCTTGTAGAGCATGTATGGTGTTCCGGTTTC 533680 >seq1057 Length=1009321 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 ||||| ||| || || | || ||||| || | |||||| || | ||||| | | Sbjct 687150 TCATTTACAAACATATTCAATGCAATTGATGCTAAATTACAAACTGCAACTTCATC-TGA 687092 Query 118749 TCA-GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 | | || || || | |||||| ||||| | ||| | |||||||||||||| || || Sbjct 687091 TGAAGTATATTCAACAATTTCAGTGCAAAGGTTACTGCATTTAATGGTGCCCAAATTTTT 687032 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 |||||| ||| |||| || | ||||||||| ||||||||||| || || || || Sbjct 687031 TTGATTACTTTTTCTGTTGCATGAATCCTTGTAGAGCATGTATGGTGTTCCGGTTTC 686975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618416677865760