Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1732 107 1e-18 >seq1732 Length=1186882 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || ||||| || | || || || || || ||||||||||||||||| Sbjct 785006 CCACCTCGGAGTCGCAATACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAG 784947 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | ||||||||| || || || || ||||| || || || || Sbjct 784946 AGGGTGCGACCATCCTCTAATTGTTTACCAGCGAAGATCAATCGCTGCTGATCTGGGGGA 784887 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | ||||| | || |||||| ||| || Sbjct 784886 ATACCCTCTTTGTCTTGGAT-TTTAGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAAC 784828 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| ||||| ||||| || | |||||||| ||||||||||| Sbjct 784827 TTCAAGGGTAATCGTCTTACCAGTGAGAGTTTTCACGAAAATCTGCAT 784780 Score = 104 bits (114), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| || | |||||| ||| || ||||||||||| || || || Sbjct 784778 CCGCCACGGAGACGCAGAACAAGATGGAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAC 784719 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||| | || || || || || || || || || || || || || Sbjct 784718 AGTGTGCGGCCGTCTTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGATCTGGAGGA 784659 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | |||||| | ||| ||||| ||| || Sbjct 784658 ATGCCTTCTTTATCT-TGAATTTTAGCTTTAACATTTTCAATGGTGTCGGATGGCTCGAC 784600 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||| | || || |||||||| || || ||||| || |||||||||||| |||| Sbjct 784599 TTCAAGCGTAATAGTTTTACCCGTCAAGGTTTTTACGAAAATCTGCATGGTGAT 784546 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||| | |||||| || || || || |||||||||||||| Sbjct 785462 CCACCTCGCAGACGGAGCACAAGATGGAGGGTTGATTCTTTCTGGATGTTATAATCTGAC 785403 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||| || ||||| || | |||||| ||||| || || Sbjct 785402 AAAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGG 785343 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| ||| ||| | |||| | ||||||||| || || Sbjct 785342 ATACCCTCTTTGTC-CTGAATTTTGGCCTTTACATTTTCAATTGTGTCAGAAGGTTCAAC 785284 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| || || ||||| ||||| |||||||| Sbjct 785283 CTCGAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAATATCTGCAT 785236 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||| | |||||| ||| || |||||||| || || || ||| Sbjct 785689 CCACCTCGCAGACGGAGCACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGAA 785630 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||| |||||||| || | |||||| ||||| || || Sbjct 785629 AGAGTGCGTCCGTCTTCTAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGGGG- 785571 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | ||| ||| | ||| || || ||| || Sbjct 785570 ATGCCTTCCTTGTCCTGGATCTTG-GCTTTGACGTTCTCAATAGTATCCGAAGGCTCAAC 785512 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || || || ||||||||||| Sbjct 785511 CTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785464 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||| | |||||| || ||| || || ||||| || || ||| Sbjct 786143 CCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAA 786084 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||| || || || || |||| |||||| ||||| || || Sbjct 786083 AGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGGGG- 786025 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | ||| ||| | ||| || || ||| || Sbjct 786024 ATGCCTTCCTTGTCCTGGATCTTG-GCTTTGACGTTCTCAATAGTATCCGAAGGCTCAAC 785966 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || || || ||||||||||| Sbjct 785965 CTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785918 Score = 95.1 bits (104), Expect = 8e-15 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||| | |||||| || ||| || || |||||||||||||| Sbjct 786596 CCACCTCGCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTATAATCTGAC 786537 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| || || || || || || |||| |||||| ||||| || || Sbjct 786536 AATGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCTGG-GGG 786478 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||| ||| |||||| ||||| | ||| ||||| ||| || Sbjct 786477 ATGCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTGTCAGACGGCTCAACC 786418 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || || || ||||||||||| Sbjct 786417 TCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTAACGAAAATCTGCAT 786371 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||| | ||| || ||| || || || ||||| || || ||| Sbjct 786823 CCTCCTCGCAGACGGAGCACAAGATGAAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAA 786764 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||| |||||||| || | |||||| ||||| || || Sbjct 786763 AGAGTGCGTCCGTCTTCCAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAGGGGG- 786705 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | ||| ||| | ||| || || || || Sbjct 786704 ATGCCTTCCTTGTCCTGGATCTTG-GCTTTGACGTTCTCAATAGTATCCGAAGGTTCAAC 786646 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || || || ||||||||||| Sbjct 786645 CTCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 786598 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||| | ||| || || || || || |||||||||||||| Sbjct 786369 CCACCTCGCAGACGGAGCACAAGATGAAGGGTTGATTCTTTCTGGATGTTATAATCTGAC 786310 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| || || || || || || |||| |||||| ||||| || || Sbjct 786309 AATGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCTGG-GGG 786251 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||| ||| |||||| ||||| | ||| ||||| ||| || Sbjct 786250 ATGCCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATGGTGTCAGACGGCTCAACC 786191 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || || || ||||||||||| Sbjct 786190 TCCAGAGTGATGGTCTT-CCAGTAAGGGTCTTAACGAAAATCTGCAT 786145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720409502268