Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1732 109 5e-19 seq535 95.1 1e-14 >seq1732 Length=1186882 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || ||| |||||||| ||||| || |||| ||| || ||| || Sbjct 787494 CGCAAGACCAAGTGCAGGGTGGATTCTTTTTGAATATTGTAGTCGGAAAGAGTGCGTCCG 787435 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| ||||| || || ||||||||||||||||| | ||| | || || ||| Sbjct 787434 TCTTCCAACTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTG 787375 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || ||||| || | | ||||| | ||| || |||| || ||| Sbjct 787374 TCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACCTCCAGAGTAATA 787315 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || ||||| ||||| Sbjct 787314 GTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 787280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| |||||||| ||||| || || | ||| || ||| |||| || Sbjct 785672 CACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTGCGTCCGTCTTC 785613 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | |||||| || ||||| || |||||||||||||| | ||| | || || |||||| Sbjct 785612 TAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAG-GGGGATGCCTTCCTTGTCCTG 785554 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | ||||| | ||| || |||| || ||| | || Sbjct 785553 GATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACCTCCAGAGTAATAGTCTT 785494 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || || || ||||| Sbjct 785493 GCCAGTCAAGGTCTTTACGAAAATCTGCAT 785464 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||| | ||| || || |||||| || || || || |||| | Sbjct 786143 CCACCTCTCAGACGGAGCACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAA 786084 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| |||| || || || ||||| || || || |||||||||||||| | ||| Sbjct 786083 AGAGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAG-GGGG 786025 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || ||||| || | | ||||| | ||| || Sbjct 786024 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGCTCAACC 785965 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||| | || || |||| || || || || || ||||| Sbjct 785964 TCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 785918 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || | ||| | ||| || ||| ||||| || || || || || | | Sbjct 786823 CCTCCTCGCAGACGGAGCACAAGATGAAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAA 786764 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| |||| || | |||||| || ||||| || |||||||||||||| | ||| Sbjct 786763 AGAGTGCGTCCGTCTTCCAACTGTTTTCCGGCAAAGATGAGACGCTGCTGGTCAG-GGGG 786705 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || ||||| || | | ||||| | || || Sbjct 786704 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATAGTATCCGAAGGTTCAACC 786645 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || ||| | || || |||| || || || || || ||||| Sbjct 786644 TCCAGAGTAATAGTCTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 786598 >seq535 Length=1858795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || ||| ||| || || || || || |||| ||||| || | Sbjct 57437 CGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 57496 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || || || || || || |||||||| |||||| | | |||||| Sbjct 57497 TCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG-ATTCCCTCTTT 57555 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||||| | | | || || | ||| || |||| ||||| Sbjct 57556 GTCTTGGATTTTAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAACTTCCAGTGTGAT 57615 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || |||| ||||| |||||||||||||| Sbjct 57616 AGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 57651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || ||| ||| || || || || || |||| ||||| || | Sbjct 1713551 CGCAATACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 1713492 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || || || || || || |||||||| |||||| | | |||||| Sbjct 1713491 TCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCAGGTGGG-ATTCCCTCTTT 1713433 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| ||||| | | | || || | ||| || |||| ||||| Sbjct 1713432 GTCTTGGATTTTAGCTTTGACGTTTTCAATTGTGTCAGAGGGCTCAACTTCCAGTGTGAT 1713373 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || |||| ||||| |||||||||||||| Sbjct 1713372 AGTTTTACCAGTCAAGGTTTTGACAAAGATTTGCAT 1713337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533056731548