Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1732 131 1e-25 seq1046 129 4e-25 seq535 114 9e-21 >seq1732 Length=1186882 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || ||||| ||||||||||||||||| | | Sbjct 785008 ATGCAGATATTTGTCAAGACTCTTACTGGCAAAACCATCACTCTCGAAGTTGAACCTTCT 785067 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| || || ||||||||||| | || ||||| || Sbjct 785068 GACACAATTGAAAATGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 785127 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || ||||||| | ||||||| | || |||||| Sbjct 785128 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACTCTTTCTGACTACAAC 785187 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| |||||| ||||| | || | | ||||||| || Sbjct 785188 ATCCAGAAAGAATCCACACTACATCTTGTGCTCCGTCTGCGAGGTGG 785234 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||| | ||||| ||||| || || || ||||| || | | Sbjct 784552 ATGCAGATTTTCGTAAAAACCTTGACGGGTAAAACTATTACGCTTGAAGTCGAGCCATCC 784611 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| |||| ||||| | |||||| || |||||||| | || |||||||| Sbjct 784612 GACACCATTGAAAATGTTAAAGC-TAAAATTCAAGATAAAGAAGGCATTCCTCCAGATCA 784670 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || || || || || ||||||||| ||||| | || ||||| Sbjct 784671 GCAACGATTGATCTTCGCAGGAAAGCAGTTGGAAGACGGCCGCACACTGTCTGACTACAA 784730 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| |||||||| ||||| | ||| | ||| Sbjct 784731 CATTCAAAAAGAATCCACCCTCCATCTTGTT 784761 Score = 118 bits (130), Expect = 7e-22 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || || ||||| || ||||| | || Sbjct 785918 ATGCAGATTTTCGTAAAGACCTTGACTGGCAAGACTATTACTCTGGAGGTTGAGCCTTCG 785977 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| || || ||||| ||||| | || || || || Sbjct 785978 GATACTATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCC-CCTGACCAG 786036 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || ||||| ||||||||||||| ||||||| | ||| |||||| Sbjct 786037 CAGCGTCTAATTTTCGCTGGCAAGCAACTGGAAGACGGACGCACTCTTTCCGACTACAAC 786096 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 786097 ATCCAGAAAGAGTCAAC 786113 Score = 118 bits (130), Expect = 7e-22 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||||| || || || || |||||||| || ||||| | | Sbjct 786371 ATGCAGATTTTCGTTAAGACCCTTACTGGCAAGACCATCACTCTGGAGGTTGAGCCGTCT 786430 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| || || || || ||||| | || ||||| || Sbjct 786431 GACACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGCAT-CCCCCAGACCAG 786489 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || ||||| || |||||||| | ||||| || ||||| ||| Sbjct 786490 CAGCGTCTAATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTATAAC 786549 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 786550 ATCCAGAAAGAGTCAAC 786566 Score = 118 bits (130), Expect = 7e-22 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || || ||||| || ||||| | || Sbjct 786598 ATGCAGATTTTCGTAAAGACCTTGACTGGCAAGACTATTACTCTGGAGGTTGAACCTTCG 786657 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| || || ||||| ||||| | || || || || Sbjct 786658 GATACTATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCAT-CCCCCTGACCAG 786716 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| ||||| ||||||||| ||||||| | || |||||| Sbjct 786717 CAGCGTCTCATCTTTGCCGGAAAACAGTTGGAAGACGGACGCACTCTTTCTGACTACAAC 786776 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| |||||| | ||| | || | | |||||||||| Sbjct 786777 ATCCAGAAAGAATCCACACTTCATCTTGTGCTCCGTCTGCGAGGAGG 786823 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || || || ||||||||||| ||||| | | Sbjct 785236 ATGCAGATATTTGTCAAAACTTTGACTGGTAAGACCATCACTCTCGAGGTTGAACCTTCT 785295 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| |||||| |||||||| ||| | || || || || Sbjct 785296 GACACAATTGAAAATGTAAAGGCCAAAATTCAGGACAAAGAGGGTATCCCCCCTGACCAG 785355 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||||||| ||||||| | || ||||| ||||| ||| Sbjct 785356 CAGCGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGCCGAACTTTGTCAGATTATAAC 785415 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 785416 ATCCAGAAAGAATCAAC 785432 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| ||||| || || ||||| || || |||||||| | | Sbjct 784780 ATGCAGATTTTCGTGAAAACTCTCACTGGTAAGACGATTACCCTTGAAGTTGAGCCTTCA 784839 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| |||| | ||||| |||||||| ||| | || |||||||| Sbjct 784840 GACACTATCGAGAATGTTAAGGC-TAAAATCCAAGACAAAGAGGGTATTCCCCCAGATCA 784898 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || || |||||| | || || | ||||| | ||||| || Sbjct 784899 GCAGCGATTGATCTTCGCTGGTAAACAATTAGAGGATGGTCGCACCCTCTCAGATTATAA 784958 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 784959 CATTCAGAAAGAATCGAC 784976 Score = 109 bits (120), Expect = 4e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||||| || || || || |||||||| || ||||| | | Sbjct 786145 ATGCAGATTTTCGTTAAGACCCTTACTGG-AAGACCATCACTCTGGAGGTTGAGCCGTCT 786203 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| || || || || ||||| | || ||||| || Sbjct 786204 GACACCATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGCAT-CCCCCAGACCAG 786262 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || ||||| || |||||||| | ||||| || ||||| ||| Sbjct 786263 CAGCGTCTAATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTATAAC 786322 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 786323 ATCCAGAAAGAATCAAC 786339 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || || ||||| || ||||| | || Sbjct 785464 ATGCAGATTTTCGTAAAGACCTTGACTGGCAAGACTATTACTCTGGAGGTTGAGCCTTCG 785523 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| || || ||||| ||||| | || || || || Sbjct 785524 GATACTATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCAT-CCCCCTGACCAG 785582 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| ||||| | ||||||| ||||||| | || ||||| Sbjct 785583 CAGCGTCTCATCTTTGCCGGAAAACAGTTAGAAGACGGACGCACTCTTTCTGACTACAAT 785642 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| ||||| Sbjct 785643 ATTCAAAAAGAATCCAC 785659 >seq1046 Length=465179 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || || | Sbjct 190010 TACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTGGAAGC 190069 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | | ||||| | |||| | || ||| || |||||||| || | || ||||| Sbjct 190070 CTCAGACACCATCGAAAATGTGAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGA 190129 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||| | || || || || ||||| ||||||| | || ||| | ||||| Sbjct 190130 CCAGCAACGTCTTATCTTCGCTGGTAAACAGTTGGAAGATGGCCGTACTCTCTCTGATTA 190189 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| || ||||| | || || || | |||||| ||||||| Sbjct 190190 CAACATCCAAAAGGAATCCACCCTCCACTTGGTGCTCAGGTTGAGAGGAGG 190240 >seq535 Length=1858795 Score = 114 bits (126), Expect = 9e-21 Identities = 165/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||| | || |||||| | || ||| | |||||||| | | Sbjct 56971 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAGCCATCA 56913 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| ||||||| |||||||| || | || || || ||| Sbjct 56912 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 56853 Query 23731 CAGCGTTTAATATTTGCCGGCAAA-CAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || || ||| || ||||||||||| | ||||| | ||| || || Sbjct 56852 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 56793 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| || ||| | ||||||||||||| ||| |||| ||| Sbjct 56792 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAA-GTTAAGAGGTGGA 56745 Score = 114 bits (126), Expect = 9e-21 Identities = 165/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||| | || |||||| | || ||| | |||||||| | | Sbjct 1714017 ATGCAAATCTTTGTCAAAACCTTGACTGGAAAA-CAATAACTTTAGAAGTTGAGCCATCA 1714075 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| ||||||| |||||||| || | || || || ||| Sbjct 1714076 GACACCATCGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGAATTCCACCTGACCAA 1714135 Query 23731 CAGCGTTTAATATTTGCCGGCAAA-CAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || || ||| || ||||||||||| | ||||| | ||| || || Sbjct 1714136 CAAAGATTGATCTTCGCAGGCCAAGCAACTGGAAGATGGCCGCACACTTTCCGACTATAA 1714195 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| || ||| | ||||||||||||| ||| |||| ||| Sbjct 1714196 TATTCAAAAAGAATCTACACTGCATTTAGTTTTAA-GTTAAGAGGTGGA 1714243 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||||||||| || || ||||| ||||| ||||| || | Sbjct 57423 ATGCAAATCTTTGTCAAGACCCTCACGGGTAAGACCATCACACTCGAGGTTGA-GCCTCT 57365 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| |||||||| || | || | || || Sbjct 57364 GACACCATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAAT-CCCACTGACCAG 57306 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || || ||||| || ||||||||| | |||||| | ||| |||||| Sbjct 57305 CA-CGACTGATCTTCGCCGGTAA--GACTGGAAGATGGCCGCACTCTCTCCGACTACAAC 57249 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 57248 ATTCAGAAGGAGTCCAC 57232 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||||||||| || || ||||| ||||| ||||| || | Sbjct 1713565 ATGCAAATCTTTGTCAAGACCCTCACGGGTAAGACCATCACACTCGAGGTTGA-GCCTCT 1713623 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| |||||||| || | || | || || Sbjct 1713624 GACACCATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAAT-CCCACTGACCAG 1713682 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || || ||||| || ||||||||| | |||||| | ||| |||||| Sbjct 1713683 CA-CGACTGATCTTCGCCGGTAA--GACTGGAAGATGGCCGCACTCTCTCCGACTACAAC 1713739 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1713740 ATTCAGAAGGAGTCCAC 1713756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999729697168